View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_152 (Length: 279)
Name: NF0809_low_152
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 266
Target Start/End: Complemental strand, 3546105 - 3545876
Alignment:
| Q |
36 |
tgaaatttgattgaaagtctatatataattatatcgatacataaaatttgcatccacatatataagaacggaatatttgcaacgggcgtggtgaaacata |
135 |
Q |
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| T |
3546105 |
tgaaatttgattgaaaatctgtatacaattatatcgatacataaaatttgcatccacatatataagcacggaatatttgcaacgggcgtggtgaa-cata |
3546007 |
T |
|
| Q |
136 |
tttaacggatttttgcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttat |
235 |
Q |
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| T |
3546006 |
tttaacggattttggcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagtttaccaatgtaattgttttttat |
3545907 |
T |
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| Q |
236 |
ataatcaccatattattacacgacctatgat |
266 |
Q |
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| T |
3545906 |
ataatcaccatattattacacgacctatgat |
3545876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 24865081 - 24864999
Alignment:
| Q |
158 |
aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatataat |
240 |
Q |
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| T |
24865081 |
aacattacattaattctgataatttttatttaatatttttaaacattcaacaatattaaaaatttaattattttttatataat |
24864999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 3421331 - 3421404
Alignment:
| Q |
158 |
aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgtttt |
231 |
Q |
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| T |
3421331 |
aacattacattaatgttgataatttttatttaatacctttaaacatttcacaatattagcaatgtaattgtttt |
3421404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 21118553 - 21118615
Alignment:
| Q |
174 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata |
236 |
Q |
| |
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| T |
21118553 |
tgataatttttatttaatatttttaaacatttgacaatattaacaatgtaattattttttata |
21118615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 494332 - 494269
Alignment:
| Q |
174 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatat |
237 |
Q |
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|||||||||| ||| || |||||||||||||| |||| |||| ||||| |||| |||||||||| |
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|
| T |
494332 |
tgataattttcatttaatatctttaaacatttgacaatattaacaatgaaattattttttatat |
494269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 7183937 - 7183890
Alignment:
| Q |
193 |
tctttaaacatttaacaagattaccaatgtaattgttttttatataat |
240 |
Q |
| |
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|
| T |
7183937 |
tctttaaatatttcacaatattactaatgtaattgttttttatataat |
7183890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 3927602 - 3927664
Alignment:
| Q |
174 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata |
236 |
Q |
| |
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||||||| || ||| ||||| ||||||||||| |||| |||| |||| ||||||||||||||| |
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| T |
3927602 |
tgataatatttatttaacatttttaaacatttcacaatattatcaatataattgttttttata |
3927664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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