View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_157 (Length: 271)

Name: NF0809_low_157
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_157
NF0809_low_157
[»] chr4 (40 HSPs)
chr4 (13-271)||(29321204-29321466)
chr4 (152-244)||(10203630-10203723)
chr4 (133-244)||(32063662-32063774)
chr4 (152-225)||(39667119-39667193)
chr4 (138-244)||(30641515-30641620)
chr4 (143-244)||(32062589-32062691)
chr4 (142-244)||(11446269-11446372)
chr4 (142-244)||(40316989-40317092)
chr4 (142-244)||(40327063-40327166)
chr4 (141-225)||(39539263-39539348)
chr4 (140-244)||(41582444-41582549)
chr4 (143-271)||(29320029-29320160)
chr4 (169-244)||(8438307-8438382)
chr4 (142-244)||(30642472-30642575)
chr4 (142-219)||(40388457-40388535)
chr4 (152-225)||(50504168-50504242)
chr4 (152-225)||(54858903-54858977)
chr4 (142-225)||(11448074-11448158)
chr4 (143-269)||(7280209-7280336)
chr4 (141-223)||(7451832-7451915)
chr4 (142-244)||(40387466-40387569)
chr4 (138-216)||(43155850-43155929)
chr4 (152-225)||(3032591-3032665)
chr4 (152-225)||(5818118-5818192)
chr4 (152-225)||(11523958-11524032)
chr4 (139-244)||(41583557-41583663)
chr4 (152-225)||(45463082-45463156)
chr4 (153-225)||(10408232-10408305)
chr4 (151-244)||(8439550-8439643)
chr4 (152-225)||(27068919-27068993)
chr4 (152-225)||(27069253-27069327)
chr4 (140-217)||(50418665-50418743)
chr4 (152-225)||(54858569-54858643)
chr4 (143-269)||(55866111-55866236)
chr4 (140-225)||(55867459-55867545)
chr4 (142-222)||(24711110-24711191)
chr4 (149-225)||(54087040-54087117)
chr4 (138-225)||(16605597-16605685)
chr4 (141-223)||(36009160-36009244)
chr4 (138-194)||(52909630-52909686)
[»] chr5 (26 HSPs)
chr5 (142-271)||(40150113-40150243)
chr5 (142-271)||(40148897-40149027)
chr5 (142-244)||(24141451-24141554)
chr5 (141-225)||(5993887-5993972)
chr5 (143-271)||(30096841-30096970)
chr5 (139-225)||(17544391-17544478)
chr5 (152-221)||(8875458-8875528)
chr5 (152-225)||(33871348-33871422)
chr5 (141-225)||(20840531-20840616)
chr5 (149-225)||(35512154-35512231)
chr5 (140-244)||(42067850-42067955)
chr5 (140-225)||(39453297-39453383)
chr5 (143-223)||(3529189-3529270)
chr5 (152-216)||(8875619-8875684)
chr5 (141-225)||(38475344-38475429)
chr5 (142-225)||(16157200-16157284)
chr5 (142-223)||(11761748-11761830)
chr5 (152-225)||(20152790-20152864)
chr5 (140-221)||(20814484-20814566)
chr5 (143-244)||(28771164-28771266)
chr5 (140-225)||(14194768-14194853)
chr5 (143-223)||(27587148-27587229)
chr5 (142-195)||(39453675-39453728)
chr5 (149-244)||(19892314-19892410)
chr5 (142-225)||(24547470-24547554)
chr5 (177-244)||(42063288-42063356)
[»] chr3 (35 HSPs)
chr3 (141-261)||(26718756-26718872)
chr3 (151-269)||(33154885-33155004)
chr3 (140-244)||(21186021-21186126)
chr3 (141-244)||(1078535-1078638)
chr3 (141-244)||(1079547-1079651)
chr3 (141-244)||(47856385-47856489)
chr3 (143-244)||(47857571-47857673)
chr3 (140-244)||(6956245-6956350)
chr3 (146-244)||(32431518-32431617)
chr3 (144-244)||(23276309-23276410)
chr3 (145-217)||(43607782-43607855)
chr3 (140-225)||(2796176-2796262)
chr3 (152-225)||(29118536-29118610)
chr3 (146-221)||(9368650-9368726)
chr3 (154-225)||(43998156-43998228)
chr3 (142-244)||(25107212-25107315)
chr3 (141-225)||(23458324-23458409)
chr3 (152-244)||(33156320-33156413)
chr3 (157-244)||(43608808-43608896)
chr3 (155-225)||(3469543-3469614)
chr3 (143-225)||(9294303-9294386)
chr3 (142-244)||(19741218-19741321)
chr3 (152-222)||(29118884-29118955)
chr3 (142-217)||(33689381-33689456)
chr3 (144-217)||(25108448-25108522)
chr3 (152-225)||(32306767-32306841)
chr3 (152-217)||(33506187-33506253)
chr3 (152-225)||(37778616-37778690)
chr3 (152-221)||(40788767-40788837)
chr3 (140-221)||(41988581-41988663)
chr3 (152-225)||(47551502-47551576)
chr3 (141-225)||(33689724-33689809)
chr3 (141-194)||(40758487-40758540)
chr3 (138-217)||(36418041-36418121)
chr3 (144-223)||(51994233-51994313)
[»] chr2 (23 HSPs)
chr2 (142-244)||(6589685-6589788)
chr2 (142-244)||(28230065-28230168)
chr2 (141-242)||(28228668-28228770)
chr2 (144-244)||(3653406-3653506)
chr2 (152-225)||(41587244-41587317)
chr2 (146-244)||(202682-202781)
chr2 (140-244)||(39936573-39936677)
chr2 (142-270)||(43741976-43742105)
chr2 (143-244)||(39423515-39423617)
chr2 (138-244)||(39935451-39935557)
chr2 (152-225)||(15604348-15604422)
chr2 (152-225)||(28226087-28226161)
chr2 (162-223)||(39498329-39498391)
chr2 (140-244)||(25231174-25231279)
chr2 (142-195)||(34447812-34447865)
chr2 (152-225)||(8710811-8710885)
chr2 (141-222)||(11163371-11163453)
chr2 (137-195)||(37895341-37895399)
chr2 (152-221)||(41588405-41588475)
chr2 (144-244)||(3652212-3652313)
chr2 (142-195)||(36382503-36382556)
chr2 (149-194)||(44713801-44713846)
chr2 (150-225)||(15848095-15848171)
[»] chr8 (24 HSPs)
chr8 (157-271)||(9337040-9337155)
chr8 (143-244)||(2535876-2535978)
chr8 (142-225)||(10749853-10749937)
chr8 (142-225)||(4995002-4995085)
chr8 (138-225)||(7983423-7983511)
chr8 (144-219)||(11763027-11763103)
chr8 (152-225)||(25124906-25124980)
chr8 (141-225)||(23698589-23698674)
chr8 (155-222)||(27500424-27500492)
chr8 (151-225)||(44664516-44664591)
chr8 (151-244)||(8746332-8746426)
chr8 (152-225)||(10445678-10445752)
chr8 (152-225)||(35634442-35634516)
chr8 (141-225)||(23663859-23663944)
chr8 (142-225)||(8316933-8317017)
chr8 (143-225)||(16388871-16388954)
chr8 (143-225)||(39071676-39071759)
chr8 (152-225)||(234083-234157)
chr8 (152-225)||(710494-710568)
chr8 (152-225)||(747706-747780)
chr8 (152-225)||(871601-871675)
chr8 (143-244)||(4405986-4406088)
chr8 (152-225)||(44664851-44664925)
chr8 (162-223)||(1425369-1425430)
[»] chr1 (40 HSPs)
chr1 (140-271)||(44522144-44522276)
chr1 (138-220)||(5734005-5734087)
chr1 (152-221)||(35038464-35038534)
chr1 (139-225)||(19515815-19515902)
chr1 (142-244)||(32132303-32132406)
chr1 (152-225)||(40714453-40714527)
chr1 (141-225)||(23209672-23209757)
chr1 (152-225)||(28325147-28325220)
chr1 (143-225)||(6367562-6367645)
chr1 (152-225)||(17188963-17189037)
chr1 (142-223)||(25647883-25647965)
chr1 (152-225)||(30326505-30326579)
chr1 (143-244)||(34464449-34464551)
chr1 (143-244)||(34849011-34849113)
chr1 (143-244)||(34850391-34850493)
chr1 (152-225)||(49955690-49955764)
chr1 (152-244)||(8898526-8898619)
chr1 (139-223)||(47999439-47999524)
chr1 (142-225)||(17662195-17662279)
chr1 (141-244)||(34464775-34464879)
chr1 (142-217)||(17661851-17661926)
chr1 (142-220)||(17691218-17691297)
chr1 (143-225)||(31197065-31197148)
chr1 (152-222)||(40714789-40714860)
chr1 (152-225)||(8898860-8898934)
chr1 (152-225)||(17189194-17189268)
chr1 (152-225)||(20760848-20760922)
chr1 (152-225)||(35040957-35041031)
chr1 (152-225)||(49955356-49955430)
chr1 (142-195)||(6367938-6367991)
chr1 (144-244)||(13914393-13914494)
chr1 (141-244)||(32133249-32133354)
chr1 (141-217)||(35473629-35473706)
chr1 (141-225)||(41098731-41098816)
chr1 (149-225)||(46163036-46163113)
chr1 (142-225)||(26024422-26024506)
chr1 (138-194)||(36694277-36694333)
chr1 (138-194)||(36710378-36710434)
chr1 (149-252)||(40439507-40439611)
chr1 (142-194)||(46899977-46900029)
[»] chr7 (37 HSPs)
chr7 (142-244)||(32687396-32687499)
chr7 (141-223)||(10092215-10092298)
chr7 (138-244)||(32688544-32688651)
chr7 (143-244)||(18855980-18856082)
chr7 (141-244)||(5457233-5457337)
chr7 (138-225)||(28469353-28469441)
chr7 (143-244)||(18087664-18087766)
chr7 (147-244)||(22828144-22828242)
chr7 (142-225)||(19204488-19204572)
chr7 (139-244)||(17886816-17886922)
chr7 (152-225)||(22081569-22081642)
chr7 (141-225)||(6764175-6764263)
chr7 (152-225)||(42618254-42618328)
chr7 (152-225)||(43266275-43266349)
chr7 (152-225)||(43266609-43266683)
chr7 (152-225)||(46205652-46205726)
chr7 (141-225)||(13050126-13050211)
chr7 (141-225)||(18086287-18086372)
chr7 (142-225)||(6571012-6571096)
chr7 (151-225)||(2640523-2640598)
chr7 (143-225)||(10935794-10935877)
chr7 (142-244)||(13384501-13384604)
chr7 (143-225)||(42362450-42362533)
chr7 (142-223)||(17102019-17102101)
chr7 (152-225)||(25453471-25453545)
chr7 (152-225)||(32068105-32068179)
chr7 (152-216)||(10600035-10600100)
chr7 (139-271)||(20425474-20425607)
chr7 (152-224)||(23058773-23058846)
chr7 (143-223)||(42731419-42731500)
chr7 (144-223)||(6253472-6253552)
chr7 (141-208)||(18855408-18855476)
chr7 (142-225)||(22871622-22871706)
chr7 (143-195)||(23608808-23608860)
chr7 (141-208)||(27396957-27397025)
chr7 (141-205)||(29144348-29144412)
chr7 (193-225)||(48789148-48789180)
[»] scaffold0008 (1 HSPs)
scaffold0008 (143-244)||(239877-239979)
[»] chr6 (27 HSPs)
chr6 (143-270)||(15116532-15116660)
chr6 (140-244)||(28498351-28498456)
chr6 (155-244)||(24210543-24210633)
chr6 (140-244)||(29810762-29810867)
chr6 (141-244)||(26463177-26463281)
chr6 (142-208)||(139807-139872)
chr6 (142-208)||(147828-147893)
chr6 (152-225)||(7905252-7905326)
chr6 (152-223)||(15913893-15913965)
chr6 (170-222)||(3176376-3176429)
chr6 (152-225)||(21836041-21836114)
chr6 (143-271)||(26464498-26464627)
chr6 (141-225)||(30337447-30337532)
chr6 (149-225)||(33517540-33517617)
chr6 (149-244)||(141066-141162)
chr6 (149-244)||(149087-149183)
chr6 (141-244)||(8090253-8090357)
chr6 (145-271)||(13378527-13378654)
chr6 (152-221)||(7160813-7160883)
chr6 (152-225)||(7905586-7905660)
chr6 (143-244)||(15115339-15115441)
chr6 (152-225)||(22502783-22502857)
chr6 (152-225)||(22503117-22503191)
chr6 (152-213)||(31406887-31406949)
chr6 (138-195)||(30726135-30726192)
chr6 (142-225)||(8089442-8089526)
chr6 (142-225)||(21628058-21628142)
[»] scaffold0388 (1 HSPs)
scaffold0388 (152-225)||(12582-12656)
[»] scaffold0775 (1 HSPs)
scaffold0775 (149-244)||(6304-6400)
[»] scaffold0031 (1 HSPs)
scaffold0031 (143-225)||(68965-69048)
[»] scaffold0328 (1 HSPs)
scaffold0328 (152-225)||(11483-11557)
[»] scaffold0006 (1 HSPs)
scaffold0006 (152-225)||(221800-221873)
[»] scaffold0128 (1 HSPs)
scaffold0128 (149-222)||(19863-19937)
[»] scaffold0220 (1 HSPs)
scaffold0220 (141-257)||(23229-23346)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 29321466 - 29321204
Alignment:
Q  13 attcttgcatggtacacaaaaatatttaccctctgtatcttgagcttatgattacgaacaaaaatatcctcttcgagttgatgtcgcttgtggtgcacac 112  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29321466 attcttgcatggcacacaaaaatatttactctctgtatctggagcttatgattacgaacaaaaatatcctctccgagttgatgtcgcttgtggtgcacac 29321367  T
Q  113 tttcctgtc---aaaaatgacataaatgaaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaat 208  Q
    |||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | || |||||||||||    
T  29321366 tttcctgtcctaaaaaatgacataaatgaaataggctttaatatgtgtttcgtccttgcaattaagggtcatttaaaaattggtttctataatcgttaat 29321267  T
Q  209 tctggcaaattacccttttaaattttaatcatttaagaattggtttctcaacctagttaatca 271  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29321266 tctggcaaattaccttttcaaattttaatcatttaagaattggttcctcaacctagttaatca 29321204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 10203630 - 10203723
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||||||||||| | |||||||||||||| |||||||| ||| |||||||||||||||||| ||||||| |||| |||| |||||||||||||    
T  10203630 atgtgtttcgtccctataattaagggtcatttaaaaattagtcactgtaatcgttaattctgacaaattatccttataaaatttaatcatttaa 10203723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 32063774 - 32063662
Alignment:
Q  133 aaatgaaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaat 231  Q
    ||||| || |||||||||||||| ||| |||| || ||||| ||||||| |||||||||||  |||||||||||||| ||||||||||||||||  |||     
T  32063774 aaatggaaaaggctttaatatgtattttgtccctgcaattaggggtcatttaaaaattggtttctgtaatcgttaatactggcaaattacccttgcaaag 32063675  T
Q  232 tttaatcatttaa 244  Q
    |||||||||||||    
T  32063674 tttaatcatttaa 32063662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 39667193 - 39667119
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||| |||||||||||    
T  39667193 atgtgtttcgtccttgtaattacgggtcatttaaaaattggtccctgtaatcgttaatcctggtaaattaccctt 39667119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 30641515 - 30641620
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattacccttttaaattttaat 237  Q
    |||| |||||||||||||||||||||| |  ||||| ||||||| |||||||| || |||||||||||||| || |||||||||| ||  ||| ||||||    
T  30641515 aaattggctttaatatgtgtttcgtccctccaattaggggtcatttaaaaatttgt-ctgtaatcgttaatccttgcaaattaccattacaaagtttaat 30641613  T
Q  238 catttaa 244  Q
    |||||||    
T  30641614 catttaa 30641620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 32062589 - 32062691
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||||||||||||||| |||| || ||||| ||||||| ||||||||||||| ||||| | ||||| ||| ||||||| |||| |||| ||||||||||    
T  32062589 ggctttaatatgtgtttggtccctgaaattaggggtcatttaaaaattggtccttgtaaacattaatcctgacaaattagccttgtaaaatttaatcatt 32062688  T
Q  242 taa 244  Q
    |||    
T  32062689 taa 32062691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 11446269 - 11446372
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||| |||||||||||||||||| || |||||  |||||| |||||||||| || || |||||||||| ||||||||||||||||  ||| ||||||| |    
T  11446269 aggcattaatatgtgtttcgtccctgcaattagaggtcatttaaaaattggttcatggaatcgttaatcctggcaaattacccttgcaaagtttaatctt 11446368  T
Q  241 ttaa 244  Q
    ||||    
T  11446369 ttaa 11446372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 40317092 - 40316989
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| || | ||| || | || |||||||||| | |||||||||||||| |||| |||||||||||| ||| ||||||| |    
T  40317092 aggctttaatatgtgtttcgtccctgcagttagggcttatttaaaaattggcctctgtaatcgttaatcctggaaaattaccctttcaaagtttaatcct 40316993  T
Q  241 ttaa 244  Q
    ||||    
T  40316992 ttaa 40316989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 40327166 - 40327063
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| || | ||| || | || |||||||||| | |||||||||||||| |||| |||||||||||| ||| ||||||| |    
T  40327166 aggctttaatatgtgtttcgtccctgcagttagggcttatttaaaaattggcctctgtaatcgttaatcctggaaaattaccctttcaaagtttaatcct 40327067  T
Q  241 ttaa 244  Q
    ||||    
T  40327066 ttaa 40327063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 39539348 - 39539263
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| |||||| ||||||||||| | ||||||||||||  |||||||||||||||| |||||||| ||||    
T  39539348 taggcttaaatatgtatttcatccttgcaattaagggtcgtttaaaaattggtcaatgtaatcgttaattcttgcaaattagcctt 39539263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 41582444 - 41582549
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||||||||||||||||||| ||| || ||| | ||||||| ||||||||||| ||| ||||||||||| |||||||||| ||| |  |||  ||||||    
T  41582444 ataggctttaatatgtgtttcatccctgcaatcaggggtcatttaaaaattggtccctctaatcgttaatcctggcaaattgcccctgcaaaagttaatc 41582543  T
Q  239 atttaa 244  Q
    ||||||    
T  41582544 atttaa 41582549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 29320029 - 29320160
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||||||||| ||||| |||| || ||||   ||| || ||||||||||||| ||||||| ||||| ||  ||||||||||||| ||| ||||||||||    
T  29320029 ggctttaatatatgtttggtccctgcaatttgaggttatttaaaaattggtccctgtaatccttaatcctaacaaattaccctttcaaagtttaatcatt 29320128  T
Q  242 taagaattggt--ttctcaacctagttaatca 271  Q
    | |||||||||   |||||||| |||||||||    
T  29320129 ttagaattggtccctctcaacccagttaatca 29320160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 8438307 - 8438382
Alignment:
Q  169 aattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||| ||||||| |||||||||||| ||||||||||||| |||||||||||| |||  |||  ||||||||||||    
T  8438307 aattaggggtcatttaaaaattggtcatgtaatcgttaatcctggcaaattactcttgcaaaccttaatcatttaa 8438382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 30642575 - 30642472
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| || ||||| ||||||| ||||||||  ||  ||||||||||||| || ||||||||  |||  ||| |||||||||    
T  30642575 aggctttaatatgtgtttcgtccctgcaattatgggtcatttaaaaattcatcattgtaatcgttaatcctagcaaattagtcttgcaaagtttaatcat 30642476  T
Q  241 ttaa 244  Q
    ||||    
T  30642475 ttaa 30642472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 40388535 - 40388457
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaatt 219  Q
    ||||||||||||||||||| ||| || ||||||||| ||| ||||||||||| ||| |||||| |||| ||||||||||    
T  40388535 aggctttaatatgtgtttcatccctgcaattaagggccatttaaaaattggtccctctaatcgctaatcctggcaaatt 40388457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 50504242 - 50504168
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||||||||| | ||||| |||||||| ||| |||||||||||||| | ||||| ||||||||    
T  50504242 atgtgtttcgtccttgtaattaggcgtcatttaaaaattagtctctgtaatcgttaatccaggcaatttaccctt 50504168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 54858977 - 54858903
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| ||||||||||||| ||||||| ||||||||    
T  54858977 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctggcaatttaccctt 54858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 11448158 - 11448074
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||||||| |||||||| ||||| | ||||||||| || ||||||||| |||| || |||||||||||||    
T  11448158 aggcttaaatatgtatttcgtccctgtaattaggggtcgtttaaaaattgatctctgtaatcgctaatccttgcaaattaccctt 11448074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 7280209 - 7280336
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    |||||| |||| ||||| |||||||||| || ||||||| |||||| ||||| ||||| || ||||| ||| ||  || |||| | ||| |||||||| |    
T  7280209 ggcttttatatatgtttagtccttgtaaataggggtcatttaaaaaatggtctctgtattctttaatcctgtcattttgccctgtcaaaatttaatcact 7280308  T
Q  242 taagaattggtttctcaacctagttaat 269  Q
    ||| ||||||||||||| || |||||||    
T  7280309 taaaaattggtttctcagccaagttaat 7280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 7451832 - 7451915
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    ||||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| ||||||||||||||| ||||||| ||||||    
T  7451832 taggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttaccc 7451915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 40387466 - 40387569
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||| ||| || ||||| ||| ||| ||||||||||| |||||| ||| |||| |||||||||| ||| |  |||  ||||||||    
T  40387466 aggctttaatatgtgtttcatccctgcaattaggggccatttaaaaattggtccctgtattcgctaatcctggcaaattgcccctgcaaaagttaatcat 40387565  T
Q  241 ttaa 244  Q
    ||||    
T  40387566 ttaa 40387569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 43155929 - 43155850
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaa 216  Q
    |||||||||| ||||||| |||  ||||| |||||| ||||| | ||||||||||| ||||||||||||||| |||||||    
T  43155929 aaataggcttaaatatgtatttgatccttataattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaa 43155850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 3032591 - 3032665
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||| ||||||| ||||||||    
T  3032591 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctggcaatttaccctt 3032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 5818192 - 5818118
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||| ||||||||| | ||||| |||||||| || ||||||||||||||| ||| ||| ||||||||    
T  5818192 atgtgtttcgtctttgtaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctgtcaatttaccctt 5818118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 11523958 - 11524032
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| |||||||||||||| |||||||  |||||||    
T  11523958 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgttaatcctggcaatataccctt 11524032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 41583663 - 41583557
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattg-gtcctgtaatcgttaattctggcaaattacccttttaaattttaat 237  Q
    |||||||||||||||||||||| ||| || ||||| ||||||| |||||||||  | ||||| ||| |||| |||||||||| ||| |  |||  |||||    
T  41583663 aataggctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattgatttctgtattcgctaatcctggcaaattgcccctgcaaaagttaat 41583564  T
Q  238 catttaa 244  Q
    |||||||    
T  41583563 catttaa 41583557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 45463082 - 45463156
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| |||| ||||||| ||||||||    
T  45463082 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatttaccctt 45463156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 10408305 - 10408232
Alignment:
Q  153 tgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  10408305 tgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 10408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 8439643 - 8439550
Alignment:
Q  151 tatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||||||||||||| ||||||||||||  | ||||||||| || | |||||||||||| || |||||||| ||||  |||  ||||||||||||    
T  8439643 tatgtgtttcgtcct-gtaattaagggttgtttaaaaattgatcattgtaatcgttaatcctagcaaattatccttgcaaacattaatcatttaa 8439550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 27068919 - 27068993
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  27068919 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 27068993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 27069327 - 27069253
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||| | |||| ||||||| ||||||||    
T  27069327 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcctggcaatttaccctt 27069253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 50418665 - 50418743
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaa 217  Q
    |||||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| ||||||||||||||| || |||||    
T  50418665 ataggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatccttgcaaa 50418743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 54858569 - 54858643
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||| ||| ||||||||    
T  54858569 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatttaccctt 54858643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 55866111 - 55866236
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattacccttttaaattttaatcattt 242  Q
    ||||| ||||||| |||||||| || ||||| ||||| | |||||||||||  |||| ||  |||| || |||||||||||| | ||| | |||||||||    
T  55866111 ggcttaaatatgtatttcgtccctgcaattaggggtcgtttaaaaattggt-ttgtattcactaatccttgcaaattaccctctcaaagtataatcattt 55866209  T
Q  243 aagaattggtttctcaacctagttaat 269  Q
    || |||||||  || |||| |||||||    
T  55866210 aaaaattggtccctgaacccagttaat 55866236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 55867545 - 55867459
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||| ||||||| |||  ||| || ||||| ||||| | ||||||||||||| ||||||||||||| || ||||| |||||||    
T  55867545 ataggcttaaatatgtatttgatccctgcaattaggggtcgtttaaaaattggtccatgtaatcgttaatccttgcaaactaccctt 55867459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 24711110 - 24711191
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacc 222  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| |||||    
T  24711110 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacc 24711191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 54087117 - 54087040
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| |||| || ||||||||| ||||| | ||||||||||| |||||||||||||||  || ||| ||||||||    
T  54087117 aatatgtatttcatcattgtaattaggggtcgtttaaaaattggtccctgtaatcgttaatcatgacaatttaccctt 54087040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 16605597 - 16605685
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||| |  |||||||||||||||| ||||| | ||||| |||||||| || ||||||||||| ||  ||| ||| ||||||||    
T  16605597 aaataggcttaatgatgtgtttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgtcaaacctgccaatttaccctt 16605685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 36009244 - 36009160
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaaggg-tcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccc 223  Q
    ||||||| ||||||| |||  |||||||||||| ||| || | ||||||||||||| ||||||||||||| |||| || ||||||    
T  36009244 taggcttaaatatgtatttgatccttgtaattagggggtcgtttaaaaattggtccctgtaatcgttaatcctggaaatttaccc 36009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 52909686 - 52909630
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    |||||||||| ||||||| |||| |||||| ||||| || |||| ||||||||||||    
T  52909686 aaataggcttaaatatgtatttcatccttgcaattatggatcatttaaaaattggtc 52909630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 40150243 - 40150113
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||| || | |||||||||||| ||| |||||||||    
T  40150243 aggctttaatatgtgtttcgtccttgcaattaggggtcattttaaaattggtccctgtaatcgttaatcctagaaaattaccctttcaaagtttaatcat 40150144  T
Q  241 ttaagaattggtttctcaacctagttaatca 271  Q
    ||||||||||||  ||||||||| |||||||    
T  40150143 ttaagaattggtccctcaacctaattaatca 40150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 40148897 - 40149027
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| || |||||  | |||| ||||||||||||| ||||||||||||| || |||||||||||||| ||| |||||||||    
T  40148897 aggctttaatatgtgtttcgtccctgcaattagagctcatttaaaaattggtccatgtaatcgttaatcctagcaaattaccctttcaaagtttaatcat 40148996  T
Q  241 ttaagaattggtttctcaacctagttaatca 271  Q
    ||||||||||||  |||| || |||||||||    
T  40148997 ttaagaattggtccctcatcccagttaatca 40149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 24141451 - 24141554
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| || |||||   ||||| ||||||||||||| ||||||||||||| ||||||||||| ||||  ||| |||||||||    
T  24141451 aggctttaatatgtgtttcgtccctgcaattagacgtcatttaaaaattggtccctgtaatcgttaatcctggcaaattagccttgcaaagtttaatcat 24141550  T
Q  241 ttaa 244  Q
    ||||    
T  24141551 ttaa 24141554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 5993887 - 5993972
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| |||||||||||| ||||||||    
T  5993887 taggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaattctggcaatttaccctt 5993972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 30096970 - 30096841
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| |||| || |||| ||| |||||||| ||||||| |||||| |||||| ||||  | ||||||||||||| |||||||  ||||  ||||||| |    
T  30096970 ggcttaaatacgtatttcatccctgtaattaggggtcatttaaaaaatggtccctgtatccattaattctggcaatttaccctcctaaaaattaatcact 30096871  T
Q  242 taagaattggtttctcaacctagttaatca 271  Q
    ||| |||||||  |||||||||||||||||    
T  30096870 taaaaattggtccctcaacctagttaatca 30096841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 17544478 - 17544391
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||| |  |||||||||||||||| ||||| | ||||| |||||||| || ||||||||||||||| ||||||| ||||||||    
T  17544478 aataggcttaatgatgtgtttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgttaatcctggcaatttaccctt 17544391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 8875458 - 8875528
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattac 221  Q
    |||||||||||||||| ||||||| ||||| |||||||| || ||||||||||||||| ||||||| ||||    
T  8875458 atgtgtttcgtccttgcaattaagcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttac 8875528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 33871348 - 33871422
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||| ||||||| ||||||| ||||| |||||||| |||| |||||||| |||||||||||| ||||||||    
T  33871348 atgtgttttgtccttgcaattaagtgtcatttaaaaattagtccctgtaatcgctaattctggcaatttaccctt 33871422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 20840531 - 20840616
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| ||||||||||||||| || |||| ||||||||    
T  20840531 taggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtacctgtaatcgttaatcctagcaatttaccctt 20840616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 35512154 - 35512231
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| |||| |||||| ||||||||||| | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  35512154 aatatgtatttcatccttgcaattaagggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 35512231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 42067955 - 42067850
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||||||||||||||||||| ||| || ||||| ||||||| ||||| ||||| |||||||| | |||| |||||||| | ||| |  ||| |||||||    
T  42067955 ataggctttaatatgtgtttcatccctgcaattaggggtcatttaaaatttggtccctgtaattgataatcctggcaaactgcccctgcaaactttaatc 42067856  T
Q  239 atttaa 244  Q
    ||||||    
T  42067855 atttaa 42067850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 39453297 - 39453383
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||| ||| ||||||| |||| |||||| ||||| ||||| | |||||||||||| ||||||||| |||| ||||||| ||||||||    
T  39453297 atagacttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttaccctt 39453383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 3529270 - 3529189
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccc 223  Q
    ||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| ||||||||||||| ||||||| ||||||    
T  3529270 ggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttaccc 3529189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 8875684 - 8875619
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaa 216  Q
    |||||||||||||||| ||||| | ||||| |||||||| || ||||||||||||||| |||||||    
T  8875684 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaa 8875619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 38475429 - 38475344
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||  |||| |||||| ||||| ||||| | ||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  38475429 taggcttaaatatgcatttcatccttgcaattaggggtcgtttaaaaattggtccatgtaatcgttaatcctgacaatttaccctt 38475344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 16157284 - 16157200
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| ||| ||||||||||| ||| ||| ||||||||    
T  16157284 aggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctataatcgttaatcctgacaatttaccctt 16157200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 11761748 - 11761830
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||    
T  11761748 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccc 11761830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 20152790 - 20152864
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||| || ||||||| ||||| |||||||| ||| ||||||||| |||| |||| || ||||||||    
T  20152790 atgtgtttcgtccatgcaattaagcgtcatttaaaaattagtctctgtaatcgctaatcctggaaatttaccctt 20152864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 20814566 - 20814484
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattac 221  Q
    |||||||| ||||||| |||| |||||| ||||| ||||| | |||||||||||| ||||||||| |||| || |||| ||||    
T  20814566 ataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtcactgtaatcgctaatcctagcaatttac 20814484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 28771266 - 28771164
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||  |||||||||||| ||||| | ||||||||||||| |||||||| ||||  |||||| |||||| | ||   ||||||||||    
T  28771266 ggcttaaatatgtatttgatccttgtaattaggggtcgtttaaaaattggtccatgtaatcgctaatcttggcaatttacccctgtattgtttaatcatt 28771167  T
Q  242 taa 244  Q
    |||    
T  28771166 taa 28771164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 14194853 - 14194768
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||| || |||| |||| |||||||||||| ||||| | |||||||||| | ||||||   |||| ||||||| ||||||||    
T  14194853 ataggcttaaaaatgtctttcatccttgtaattaggggtcgtttaaaaattggccatgtaattactaatcctggcaatttaccctt 14194768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 27587148 - 27587229
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    ||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||    
T  27587148 ggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccc 27587229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 39453728 - 39453675
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||| ||||||| |||| |||||| ||||| ||||||| |||||||||||||    
T  39453728 aggcttaaatatgtatttcatccttgcaattaggggtcatttaaaaattggtcc 39453675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 19892314 - 19892410
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||||| |||| |||||| ||||| ||||| | ||||||||||||| |||| |||||||| || ||||| || |||| |||   ||||||||||||    
T  19892314 aatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccatgtattcgttaatccttgcaaactagccttgtaatcattaatcatttaa 19892410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 24547554 - 24547470
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| | |||||| |||| ||||||| ||||||||    
T  24547554 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccttataatcgctaatcctggcaatttaccctt 24547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 42063288 - 42063356
Alignment:
Q  177 gtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||| |||||||||||| ||||||||| |||| |||||||||| ||| |  |||| ||||||||||||    
T  42063288 gtcatttaaaaattggtctctgtaatcgctaatcctggcaaattgcccctgcaaatgttaatcatttaa 42063356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 26718872 - 26718756
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| |    ||||| |||||||||||||||||||||| |||| |||||||||    
T  26718872 taggctttaatatgtgtttcgtccatgtaattgagggtcatctaaaaattgat----taatcattaattctggcaaattacccttgtaaagtttaatcat 26718777  T
Q  241 ttaagaattggtttctcaacc 261  Q
    |||| |||||||  |||||||    
T  26718776 ttaaaaattggtccctcaacc 26718756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 33154885 - 33155004
Alignment:
Q  151 tatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatttaagaatt 249  Q
    |||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||||| |||| |||| ||||||||||||||||||    
T  33154885 tatgtgtttcgtccatgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctgacaaattatccttgtaaagtttaatcatttaagaatt 33154984  T
Q  250 ggtttctcaacctagttaat 269  Q
    |||  ||||||| |||||||    
T  33154985 ggtccctcaacccagttaat 33155004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 21186126 - 21186021
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    |||||||||||||||||||| |||| || ||||| ||||||| ||||||||||| | ||||||||||||| ||||||||||||||||  |||  ||||||    
T  21186126 ataggctttaatatgtgttttgtccatgcaattaggggtcatttaaaaattggtacatgtaatcgttaatcctggcaaattacccttgcaaaccttaatc 21186027  T
Q  239 atttaa 244  Q
    ||||||    
T  21186026 atttaa 21186021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 1078535 - 1078638
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    ||||||||||||||| |||||||| || ||||| ||||||| ||||||||||| |||||||||||||| ||||| |||||| |||| |||| ||||||||    
T  1078535 taggctttaatatgtttttcgtccatgcaattaggggtcatttaaaaattggtccctgtaatcgttaa-tctggtaaattaaccttgtaaagtttaatca 1078633  T
Q  240 tttaa 244  Q
    |||||    
T  1078634 tttaa 1078638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 1079651 - 1079547
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    |||||||||||||||||||| ||| || ||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||  ||| |||||||     
T  1079651 taggctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattagccttgcaaagtttaatct 1079552  T
Q  240 tttaa 244  Q
    |||||    
T  1079551 tttaa 1079547  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 47856385 - 47856489
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    |||||||||||||||||||||||| || ||||||| ||| | ||||||||||||| ||||||||||||| ||| |||||||| |||  ||| ||||||||    
T  47856385 taggctttaatatgtgtttcgtccctgcaattaagcgtcgtttaaaaattggtccttgtaatcgttaatcctgacaaattactcttgcaaagtttaatca 47856484  T
Q  240 tttaa 244  Q
    |||||    
T  47856485 tttaa 47856489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 47857673 - 47857571
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    |||||||||||||||||||||| |||||||| | ||| | ||||||||| || | ||||||||||||||||| |||||| ||||  ||| ||||||||||    
T  47857673 ggctttaatatgtgtttcgtccctgtaattaggtgtcgtttaaaaattgatctttgtaatcgttaattctggtaaattatccttgcaaagtttaatcatt 47857574  T
Q  242 taa 244  Q
    |||    
T  47857573 taa 47857571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 6956245 - 6956350
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||| ||||||||||||||||||| || ||||| || |||| |||||||| || ||| ||||||||||| ||||||||||||||||  ||| || ||||    
T  6956245 ataggttttaatatgtgtttcgtccctgcaattagggatcatttaaaaattagtccctataatcgttaatcctggcaaattacccttgcaaacttaaatc 6956344  T
Q  239 atttaa 244  Q
    ||||||    
T  6956345 atttaa 6956350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 32431617 - 32431518
Alignment:
Q  146 tttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||| |||||||| |||||||| ||||||| ||||||||||| |||| |||||||||| ||| ||||||| ||||  ||| ||||| |||||||    
T  32431617 tttaatatgtatttcgtccctgtaattaggggtcatttaaaaattggtccctgcaatcgttaatcctgacaaattagccttgcaaagtttaaccatttaa 32431518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 23276410 - 23276309
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcattt 242  Q
    ||||||||||||||||| ||| || ||||| ||||||| ||||||||||| |||||||||| |||| | |||||||||||| |  |||  ||||||||||    
T  23276410 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaaattggtccctgtaatcgctaatcccggcaaattacccctacaaacgttaatcattt 23276311  T
Q  243 aa 244  Q
    ||    
T  23276310 aa 23276309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 43607782 - 43607855
Alignment:
Q  145 ctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaa 217  Q
    |||||||||||||||||||| || ||||||| ||||| ||||||||||| ||||||||||||||| || |||||    
T  43607782 ctttaatatgtgtttcgtccctgcaattaagcgtcatttaaaaattggtccctgtaatcgttaatccttgcaaa 43607855  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 2796176 - 2796262
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||| ||||||| |||  |||||| ||||| ||||||| ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  2796176 ataggcttaaatatgtatttgatccttgcaattaggggtcatttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 2796262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 29118536 - 29118610
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||||||||||| ||||||||    
T  29118536 atgtgtttcgtccttgcaattatgcgtcatttaaaaattagtccctgtaatcgctaattctggcaatttaccctt 29118610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 9368726 - 9368650
Alignment:
Q  146 tttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattac 221  Q
    |||||||||| ||||||||||| ||||| ||||| | ||||||||||| ||||||||| ||||| || |||||||||    
T  9368726 tttaatatgtatttcgtccttgcaattaggggtcgtttaaaaattggtccctgtaatcattaatccttgcaaattac 9368650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 43998156 - 43998228
Alignment:
Q  154 gtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| || ||||||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||||||||    
T  43998156 gtgtttcatcattgtaattatgtgtcatttaaaaattagtccttgtaatcgttaattctggcaatttaccctt 43998228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 25107212 - 25107315
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||| | |||||||||| ||| || ||||| ||||||| |||||||||||| || |||||| |||| |||||||||| ||| |  |||| ||||||||    
T  25107212 aggcttaagtatgtgtttcatccctgcaattaggggtcatttaaaaattggtctctctaatcgctaatcctggcaaattgcccctgcaaatgttaatcat 25107311  T
Q  241 ttaa 244  Q
    ||||    
T  25107312 ttaa 25107315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 23458409 - 23458324
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | |||||||||||| ||||||||| |||| || |||| ||||||||    
T  23458409 taggcttaaatatgtatttcatccttgcaattatgggtcgtttaaaaattggtctctgtaatcgctaatccttgcaatttaccctt 23458324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 33156413 - 33156320
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||  |||||||||||||  |||||| ||||||||| |   |||||||||||||    
T  33156413 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtcattgtaatcgttaatcttggcaatttaccctttcattgtttaatcatttaa 33156320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 43608896 - 43608808
Alignment:
Q  157 tttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||| || ||||| || |||| |||||||||||| |||||||||||||| || | |||||| ||||  ||| |||||||||||||    
T  43608896 tttcgtccctgcaattagggatcatttaaaaattggtctctgtaatcgttaatcctcgtaaattaaccttgcaaagtttaatcatttaa 43608808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 3469614 - 3469543
Alignment:
Q  155 tgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  3469614 tgtttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgctaatcctggcaatttaccctt 3469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 9294386 - 9294303
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| ||| |||||| |||| ||||||| ||||||||    
T  9294386 ggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctataatcgctaatcctggcaatttaccctt 9294303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 19741321 - 19741218
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| ||||  |||||| |||||||| ||   |||||||||    
T  19741321 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcttggcaatttacccttgtattgtttaatcat 19741222  T
Q  241 ttaa 244  Q
    ||||    
T  19741221 ttaa 19741218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 29118955 - 29118884
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacc 222  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| |||| ||||||| |||||    
T  29118955 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtcactgtaatcgctaatcctggcaatttacc 29118884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 33689381 - 33689456
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaa 217  Q
    |||||| ||||||| |||| |||||| ||||| ||||| | |||||||||||| |||| ||| ||||||| |||||    
T  33689381 aggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtcatgtattcgctaattcttgcaaa 33689456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 25108522 - 25108448
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaa 217  Q
    ||||||||||||||||| ||| || ||||| ||||||| ||||| ||||| |||||||| | |||| ||||||||    
T  25108522 gctttaatatgtgtttcatccctgcaattaggggtcatttaaaatttggtccctgtaattgctaatcctggcaaa 25108448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 32306841 - 32306767
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||  |||||||| |||| ||||||| ||||||||    
T  32306841 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtcaatgtaatcgctaatcctggcaatttaccctt 32306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 33506187 - 33506253
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaatt-ggtcctgtaatcgttaattctggcaaa 217  Q
    |||||||||||||||| ||||| | ||||| |||||||| | |||| |||||| |||||||||||||    
T  33506187 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagttcctataatcgctaattctggcaaa 33506253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 37778690 - 37778616
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||| | |||| ||||||| ||||||||    
T  37778690 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaattgctaatcctggcaatttaccctt 37778616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 40788837 - 40788767
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattac 221  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||    
T  40788837 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttac 40788767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 41988581 - 41988663
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattac 221  Q
    ||||| || ||||||| |||| ||||| ||| |||||||||| ||||||||||| |||||| ||  ||||||| |||||||||    
T  41988581 ataggtttaaatatgtatttcctccttataaataagggtcatttaaaaattggtccctgtattcactaattcttgcaaattac 41988663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 47551502 - 47551576
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| |||||   ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  47551502 atgtgtttcgtccttgcaattagatgtcatttaaaaattagtccctgtaatcgctaatactggcaatttaccctt 47551576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 33689809 - 33689724
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| || ||| ||||| ||||| | |||||||||| || |||||||| |||| ||||||| ||||||||    
T  33689809 taggcttaaatatgtatttcatctttgcaattaggggtcgtttaaaaattggttcatgtaatcgctaatcctggcaatttaccctt 33689724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 40758540 - 40758487
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    ||||||| ||||||| |||| |||||| ||||| ||||||| ||||||||||||    
T  40758540 taggcttaaatatgtatttcatccttgcaattaggggtcatttaaaaattggtc 40758487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 36418121 - 36418041
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaa 217  Q
    |||| ||||| ||||||| |||| |||||||||||| ||||| | |||||||||| ||||||| ||| |||| || |||||    
T  36418121 aaattggcttaaatatgtatttcatccttgtaattaggggtcgtttaaaaattggttcctgtattcgctaatccttgcaaa 36418041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 51994313 - 51994233
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattaccc 223  Q
    |||| ||||||| |||  |||||| ||||| || || | |||||||||||||| ||||||| |||||||||||| ||||||    
T  51994313 gcttaaatatgtatttgatccttgcaattagggatcgtttaaaaattggtccttgtaatcgctaattctggcaatttaccc 51994233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 6589788 - 6589685
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||| ||||||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||    
T  6589788 aggctataatatgtgtttcgtccctgcaattaagggtcatttaaaaattggtccatgtaatcgttaattctggcaaattacccttgcaaagtttaatcat 6589689  T
Q  241 ttaa 244  Q
    ||||    
T  6589688 ttaa 6589685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 28230168 - 28230065
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||| |||||||||    
T  28230168 aggctttaatatgtgtttcgtccctgtaattatgggtcatttaaaaattggtccctgtaatcgttaatcctagcaaattaccctttcaaagtttaatcat 28230069  T
Q  241 ttaa 244  Q
    ||||    
T  28230068 ttaa 28230065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 28228668 - 28228770
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||||||||||| |||||||||||||||  ||||||||||| |||| ||| ||||||||    
T  28228668 taggctttaatatgtgtttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcgtggcaaattactctttcaaagtttaatca 28228767  T
Q  240 ttt 242  Q
    |||    
T  28228768 ttt 28228770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 3653506 - 3653406
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcattt 242  Q
    ||||||||| |||| |||||| |||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||||  ||| |||||||||||    
T  3653506 gctttaatacgtgtgtcgtccctgtaattatgggtcatttaaaaattggtccatgtaatcgttaa-tctggcaaattacccttgcaaagtttaatcattt 3653408  T
Q  243 aa 244  Q
    ||    
T  3653407 aa 3653406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 41587244 - 41587317
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  41587244 atgtgtttcgtccttgcaattaagagtcatttaaaaattggtcctgtaatcgttaatcctggaaaattaccctt 41587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 202781 - 202682
Alignment:
Q  146 tttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||| |||| ||||||||||||| ||||||||||| ||||  | | |||||||||||||    
T  202781 tttaatatgtgttttgtccctgtaattaggggtcatttaaaaattcgtccatgtaatcgttaatcctggcaaattagccttgcagagtttaatcatttaa 202682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 39936677 - 39936573
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||||||||||||||||||||||| || ||||| | ||  | | ||||||||||| ||||||||||||| ||||||||||||||||  ||| |||||||    
T  39936677 ataggctttaatatgtgtttcgtccctgcaattaggcgtggt-ttaaaattggtccttgtaatcgttaatcctggcaaattacccttgcaaagtttaatc 39936579  T
Q  239 atttaa 244  Q
    ||||||    
T  39936578 atttaa 39936573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 43742105 - 43741976
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||| ||||||| |||||||| || ||||   |||||| ||||||||||||| ||||||| ||||| ||| ||||||||||||  ||| |||||||||    
T  43742105 aggcttcaatatgtatttcgtccctgcaattggaggtcatttaaaaattggtccatgtaatcattaatcctgacaaattacccttgcaaagtttaatcat 43742006  T
Q  241 ttaagaattggtttctcaacctagttaatc 270  Q
    |||| ||||| |  ||||||| ||||||||    
T  43742005 ttaaaaattgatccctcaacccagttaatc 43741976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 39423515 - 39423617
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| |||| || |||| |||||||||||| ||||| | |||||||||||| ||||||||| |||||||||||| ||| |||| ||   ||||||||||    
T  39423515 ggcttaaatacgtatttcatccttgtaattacgggtcgtttaaaaattggtctctgtaatcgctaattctggcaatttatccttgtattgtttaatcatt 39423614  T
Q  242 taa 244  Q
    |||    
T  39423615 taa 39423617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 39935451 - 39935557
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaattacccttttaaattttaa 236  Q
    ||||||||||||||||||||||||||| || ||||| | ||  | |||||||||| || | ||||||||||| ||| ||||||| ||||  ||| |||||    
T  39935451 aaataggctttaatatgtgtttcgtcc-tgcaattaggtgtggtttaaaaattggttcttataatcgttaatcctgacaaattatccttgcaaagtttaa 39935549  T
Q  237 tcatttaa 244  Q
    ||||||||    
T  39935550 tcatttaa 39935557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 15604348 - 15604422
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  15604348 atgtgtttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 15604422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 28226161 - 28226087
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  28226161 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 28226087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 39498329 - 39498391
Alignment:
Q  162 tccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||||||||||| ||||| | ||||||||||| ||||||||||||||| ||||||| ||||||    
T  39498329 tccttgtaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttaccc 39498391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 25231279 - 25231174
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    |||||||| ||||||| |||  ||| || ||||| ||||| | ||||||||||||| |||| ||| |||| || |||||||||||||  ||| |||||||    
T  25231279 ataggcttaaatatgtatttaatccctgcaattaggggtcgtttaaaaattggtccatgtattcgctaatcctagcaaattacccttgcaaactttaatc 25231180  T
Q  239 atttaa 244  Q
    ||||||    
T  25231179 atttaa 25231174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 34447812 - 34447865
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||| ||||||| |||| |||||||||||| ||||||| |||||||||||||    
T  34447812 aggcttaaatatgtatttcatccttgtaattaggggtcatttaaaaattggtcc 34447865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 8710885 - 8710811
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||| ||| ||| ||||||||    
T  8710885 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaatcctgacaatttaccctt 8710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 11163453 - 11163371
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacc 222  Q
    ||||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| |||||    
T  11163453 taggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacc 11163371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 37895341 - 37895399
Alignment:
Q  137 gaaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||| |||||| ||||||| |||| |||||| ||||||||||| | |||||||||||||    
T  37895341 gaaaaaggcttaaatatgtatttcatccttgcaattaagggtcgtttaaaaattggtcc 37895399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 41588475 - 41588405
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattac 221  Q
    |||||||||||||||  ||||| | ||||| |||||||| |||| |||||||| |||||||||||| ||||    
T  41588475 atgtgtttcgtccttacaattaggcgtcatttaaaaattagtccctgtaatcgctaattctggcaatttac 41588405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 3652212 - 3652313
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcattt 242  Q
    ||||||||| |||||| |||| || ||| | || ||||  |||||||||||  | |||||||||||  |||||||||||||||  ||| |||||||||||    
T  3652212 gctttaatacgtgttttgtccctgcaatcagggatcattcaaaaattggtcaatataatcgttaatcatggcaaattacccttgcaaagtttaatcattt 3652311  T
Q  243 aa 244  Q
    ||    
T  3652312 aa 3652313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 36382556 - 36382503
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||| ||||||| |||| |||||| ||||||||||| | |||||||||||||    
T  36382556 aggcttaaatatgtatttcatccttgcaattaagggtcgtttaaaaattggtcc 36382503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 44713801 - 44713846
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    ||||||| |||| |||||||||||||||||| | ||||||||||||    
T  44713801 aatatgtatttcatccttgtaattaagggtcgtttaaaaattggtc 44713846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 15848095 - 15848171
Alignment:
Q  150 atatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| |||| |||| || ||||||||    
T  15848095 atatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggtaatttaccctt 15848171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 9337040 - 9337155
Alignment:
Q  157 tttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattacccttttaaattttaatcatttaagaattggtttc 255  Q
    ||||||| ||| |||||  |||||| | |||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||  |    
T  9337040 tttcgtctttgcaattagaggtcattttaaaattggtccttgtaatcgttaattttggcaaattaccctttcaaagtttaatcatttaagaattggtccc 9337139  T
Q  256 tcaacctagttaatca 271  Q
    ||||||||||||||||    
T  9337140 tcaacctagttaatca 9337155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 2535978 - 2535876
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||||||||||| |||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||  ||| ||||||||||    
T  2535978 ggctttaatatgtatttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattacccttacaaagtttaatcatt 2535879  T
Q  242 taa 244  Q
    |||    
T  2535878 taa 2535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 10749937 - 10749853
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||||||||||||| ||||| || |||| ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  10749937 aggctttaatatgtgtttcgtccttgcaattagggatcatttaaaaattggtccatgtaatcgttaatcctgtcaaattaccctt 10749853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 4995085 - 4995002
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||| |||||| ||||| ||||||| ||||||||||||||||||||| |||| ||| ||| ||||||||    
T  4995085 aggcttaaatatgtatttcatccttgcaattaggggtcatttaaaaattggtcctgtaatcgctaatcctgacaatttaccctt 4995002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 7983423 - 7983511
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||| | ||||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  7983423 aaataggcttaattatgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 7983511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 11763103 - 11763027
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaatt 219  Q
    ||||||||||||||||||||| || |||||||| |||| ||||||||||||| |||||||| |||| ||| ||||||    
T  11763103 gctttaatatgtgtttcgtccctgcaattaaggatcatttaaaaattggtccttgtaatcgctaatcctgacaaatt 11763027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 25124980 - 25124906
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| |||||||||||| ||||||||    
T  25124980 atgtgtttcgtccttgcaattaggtgtcatttaaaaattagtctctgtaatcgctaattctggcaatttaccctt 25124906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 23698674 - 23698589
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||  |||||||||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  23698674 taggcttaaatatgtatttgatccttgtaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 23698589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 27500492 - 27500424
Alignment:
Q  155 tgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacc 222  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||| |||  ||||||||    
T  27500492 tgtttcgtccttgcaattatgggtcatttaaaaattggtccatgtaatcgttaatcctgaaaaattacc 27500424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 44664516 - 44664591
Alignment:
Q  151 tatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||||||| ||||| | ||||| |||||||| || ||||||||||||||| ||||||| ||| ||||    
T  44664516 tatgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttaacctt 44664591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 8746332 - 8746426
Alignment:
Q  151 tatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||| ||| || ||||| ||||||| ||||||| |||| ||||||||||||||  || ||||||||||||  |||  ||||||||||||    
T  8746332 tatgtgtttcctccctgcaattaggggtcatttaaaaatcggtcactgtaatcgttaatcgtgacaaattacccttgcaaaccttaatcatttaa 8746426  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 10445752 - 10445678
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  10445752 atgtgtttcgtccttgcaattaggtgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 10445678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 35634516 - 35634442
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||||| ||||| |||||||| || |||||||||| |||| ||| ||| ||||||||    
T  35634516 atgtgtttcgtccttgcaattaagcgtcatttaaaaattagtccctgtaatcgctaatcctgacaatttaccctt 35634442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 23663944 - 23663859
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||  |||||| ||||| ||||| | |||||||||||| ||||||||| |||| ||||||| ||||||||    
T  23663944 taggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttaccctt 23663859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 8317017 - 8316933
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| |||||||| |||| ||||||| ||||||||    
T  8317017 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccttgtaatcgctaatcctggcaatttaccctt 8316933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 16388954 - 16388871
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| ||||||| |||||||||| || |||||| | |||| ||||||| ||||||||    
T  16388954 ggcttaaatatgtatttcatccttgcaattaggggtcatttaaaaattggttcatgtaattgctaatcctggcaatttaccctt 16388871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 39071676 - 39071759
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||| ||| ||||||||    
T  39071676 ggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaatttaccctt 39071759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 234157 - 234083
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||| |||||| ||||||| ||||||||    
T  234157 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttaccctt 234083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 710568 - 710494
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||| |||||| ||||||| ||||||||    
T  710568 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttaccctt 710494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 747780 - 747706
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||| |||||| ||||||| ||||||||    
T  747780 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttaccctt 747706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 871675 - 871601
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||| |||||| ||||||| ||||||||    
T  871675 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaattgttaatcctggcaatttaccctt 871601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 4406088 - 4405986
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||| |||||||||||| ||||  | ||||||||||||| |||| | |||||| || |||| ||||||||  ||  ||||||||||    
T  4406088 ggcttaaatatgtatttcatccttgtaattaggggttgtttaaaaattggtccatgtatttgttaatccttgcaatttacccttgcaatgtttaatcatt 4405989  T
Q  242 taa 244  Q
    |||    
T  4405988 taa 4405986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 44664925 - 44664851
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| |||| ||| ||| ||||||||    
T  44664925 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctgacaatttaccctt 44664851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 1425430 - 1425369
Alignment:
Q  162 tccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccc 223  Q
    ||||||||||||  |||| | ||||||||||||||||||||  |||| ||||||| ||||||    
T  1425430 tccttgtaattagaggtcgtttaaaaattggtcctgtaatcactaatcctggcaatttaccc 1425369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 44522144 - 44522276
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    |||||||| | |||||||||||||| || ||||| || |||| |||||||||| || ||||||||||||| || |||||||| |||| |||| |||||||    
T  44522144 ataggcttaagtatgtgtttcgtccctgcaattagggatcatttaaaaattggaccctgtaatcgttaatcctagcaaattatccttgtaaagtttaatc 44522243  T
Q  239 atttaagaattggtttctcaacctagttaatca 271  Q
    |||||||||||||| | |||||| |||||||||    
T  44522244 atttaagaattggtctttcaacccagttaatca 44522276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 5734005 - 5734087
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaatta 220  Q
    |||||||||| ||||||| ||||||||||| ||||| ||||| | |||||||||||| |||||||| |||| || ||||||||    
T  5734005 aaataggcttaaatatgtatttcgtccttgcaattaggggtcgtttaaaaattggtcatgtaatcgctaatccttgcaaatta 5734087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 35038464 - 35038534
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattac 221  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||    
T  35038464 atgtgtttcgtccttgcaattaagggtcatttaaaaattgatccatgtaatcgttaatcctagcaaattac 35038534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 19515815 - 19515902
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||  |||||||||||||||||| || ||||||||    
T  19515815 aataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtctttgtaatcgttaattctggaaatttaccctt 19515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 32132303 - 32132406
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||||||||||||||| |  |||||  |||||| |||||||| |||| ||||||||||||| || ||||||||| |||  ||| ||||||||     
T  32132303 aggctttaatatgtgtttcgtccctccaattagtggtcatttaaaaattcgtccatgtaatcgttaatccttgcaaattactcttacaaagtttaatcaa 32132402  T
Q  241 ttaa 244  Q
    ||||    
T  32132403 ttaa 32132406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 40714453 - 40714527
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || ||||||||||||||| ||||||| ||||||||    
T  40714453 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttaccctt 40714527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 23209757 - 23209672
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||| |||||||| |||| ||||||| ||||||||    
T  23209757 taggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccttgtaatcgctaatcctggcaatttaccctt 23209672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 28325220 - 28325147
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||| ||||| ||||| | ||||| |||||||| ||| |||||||||||||| |||||| ||||||||    
T  28325220 atgtgtttcggccttgcaattaggcgtcatttaaaaattagtcatgtaatcgttaattatggcaatttaccctt 28325147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 6367562 - 6367645
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  6367562 ggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 6367645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 17188963 - 17189037
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  17188963 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 17189037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 25647883 - 25647965
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| ||||||||||||||| ||||||| ||||||    
T  25647883 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttaccc 25647965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 30326505 - 30326579
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| ||||||||| || ||||||||    
T  30326505 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaattctggtaatttaccctt 30326579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 34464449 - 34464551
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||| |||||||| ||||  |||||| ||||||||  ||  ||||||||||    
T  34464449 ggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccatgtaatcgctaatcttggcaatttacccttgcaatgtttaatcatt 34464548  T
Q  242 taa 244  Q
    |||    
T  34464549 taa 34464551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 34849011 - 34849113
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| |||| ||| |||| || |||||||||||||  ||| ||||||||||    
T  34849011 ggcttaaatatgtatttaatccttgcaattaggggtcttttaaaaattggtccctgtattcgctaatccttgcaaattacccttgcaaaatttaatcatt 34849110  T
Q  242 taa 244  Q
    |||    
T  34849111 taa 34849113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 34850493 - 34850391
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| |||| ||| |||| || |||||||||||||  ||| ||||||||||    
T  34850493 ggcttaaatatgtatttaatccttgcaattaggggtcgtttaaaaattggtccctgtattcgctaatccttgcaaattacccttgcaaaatttaatcatt 34850394  T
Q  242 taa 244  Q
    |||    
T  34850393 taa 34850391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 49955764 - 49955690
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||  ||||||||||||| ||||||| ||||||||    
T  49955764 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcctggcaatttaccctt 49955690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 8898526 - 8898619
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| ||||||||| || |||| ||| ||   |||||||||||||    
T  8898526 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtcactgtaatcgctaattctggtaatttactcttgtattgtttaatcatttaa 8898619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 47999524 - 47999439
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    ||||||||| ||||||| |||  |||||||||||| ||||| | ||||||||||| |||||||||| ||||  |||||| ||||||    
T  47999524 aataggcttaaatatgtatttgatccttgtaattaggggtcgtttaaaaattggtccctgtaatcgctaatcttggcaatttaccc 47999439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 17662279 - 17662195
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||| |||||| ||||  ||||| | ||||||||||| ||| ||||||||||| ||||||| ||||||||    
T  17662279 aggcttaaatatgtatttcatccttgcaatttggggtcgtttaaaaattggttcctttaatcgttaatcctggcaatttaccctt 17662195  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 34464879 - 34464775
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    ||||||| ||||||| |||| |||||| ||||| ||||  | ||||||||||||| |||||||| ||||  |||||| ||||||||  ||  ||||||||    
T  34464879 taggcttaaatatgtatttcatccttgcaattaggggttgtttaaaaattggtccatgtaatcgctaatcttggcaatttacccttgcaatgtttaatca 34464780  T
Q  240 tttaa 244  Q
    |||||    
T  34464779 tttaa 34464775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 17661851 - 17661926
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaa 217  Q
    |||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||||||| ||| |||| || |||||    
T  17661851 aggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtcctgtattcgctaatccttgcaaa 17661926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 17691218 - 17691297
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaatta 220  Q
    |||||||||||||| ||||||||||  || || ||||| | ||||||||||| |||||||||| |||| || ||||||||    
T  17691218 aggctttaatatgtatttcgtccttacaagtaggggtcgtttaaaaattggtccctgtaatcgctaatccttgcaaatta 17691297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 31197065 - 31197148
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| ||| || ||||| ||||||| |||||||| ||| ||||| |||||||| |||| |||||||||||    
T  31197065 ggcttaaatatgtatttcatccctgcaattaggggtcatttaaaaatttgtctctgtattcgttaatcctggaaaattaccctt 31197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 40714860 - 40714789
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacc 222  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||| ||||||| |||||    
T  40714860 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaatcctggcaatttacc 40714789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 8898934 - 8898860
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||||||||| | ||||| |||||||| ||| ||||||||  |||| ||| ||| ||||||||    
T  8898934 atgtgtttcgtccttgtaattaggcgtcatttaaaaattagtctctgtaatcactaatactgacaatttaccctt 8898860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 17189268 - 17189194
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| |||||   ||||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  17189268 atgtgtttcgtccttgcaattagacgtcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 17189194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 20760922 - 20760848
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||  ||||| | ||||| |||||||| ||| ||||||||| |||| ||||||| ||||||||    
T  20760922 atgtgtttcgtccttacaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatttaccctt 20760848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 35041031 - 35040957
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||||||||||||   ||||| |||||||| |||| |||||||| |||| ||| ||| ||||||||    
T  35041031 atgtgtttcgtccttgtaattagccgtcatttaaaaattagtccatgtaatcgctaatcctgacaatttaccctt 35040957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 49955356 - 49955430
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| |  |||| |||||||| || |||||||||| |||| ||||||| ||||||||    
T  49955356 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccctgtaatcgctaatcctggcaatttaccctt 49955430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 6367991 - 6367938
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||| ||||||| |||| |||||| ||||||||||| | |||||||||||||    
T  6367991 aggcttaaatatgtatttcatccttgcaattaagggtcgtttaaaaattggtcc 6367938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 13914494 - 13914393
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcattt 242  Q
    |||| ||||||| |||| |||||| |||||  |||  | ||||||||||||| |||||||| |||| ||||||| |||||||| ||   |||||||||||    
T  13914494 gcttaaatatgtatttcatccttgcaattagaggttgtttaaaaattggtccatgtaatcgctaatcctggcaatttacccttgtattgtttaatcattt 13914395  T
Q  243 aa 244  Q
    ||    
T  13914394 aa 13914393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 32133354 - 32133249
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagg-gtcatctaaaaattggtcct-gtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    |||||||||||||||||||| | | || ||||| || ||| | |||||||| ||||| ||||||||||||  |||||||||| |||   ||| |||||||    
T  32133354 taggctttaatatgtgtttcattcctgcaattagggagtcctttaaaaattcgtccttgtaatcgttaatcttggcaaattagcctcgcaaagtttaatc 32133255  T
Q  239 atttaa 244  Q
    ||||||    
T  32133254 atttaa 32133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 35473629 - 35473706
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaa 217  Q
    ||||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||||    
T  35473629 taggcttaaatatgtatttaatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaaa 35473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 41098731 - 41098816
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||| | |||| ||||| ||||| | |||||||||||| ||||||||| |||| ||| ||| ||||||||    
T  41098731 taggcttaaatatgtatttcattcttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctgacaatttaccctt 41098816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 46163036 - 46163113
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| |||| || ||||||||| ||||| | ||||||||||||| |||||||| |||| ||| ||| ||||||||    
T  46163036 aatatgtatttcatcattgtaattaggggtcgtttaaaaattggtccatgtaatcgctaatcctgacaatttaccctt 46163113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 26024422 - 26024506
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  | |||| ||||| ||||| | |||||||||||| ||||||||| |||| ||||||| ||||||||    
T  26024422 aggcttaaatatgtatttgattcttgcaattaggggtcgtttaaaaattggtctctgtaatcgctaatcctggcaatttaccctt 26024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 36694277 - 36694333
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    |||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||    
T  36694277 aaataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtc 36694333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 36710378 - 36710434
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    |||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||    
T  36710378 aaataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtc 36710434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 40439611 - 40439507
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaa-gggtcatctaaaaattggtcctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaagaa 247  Q
    ||||||| |||| |||||| |||||| ||||| | ||||||||| || |||| ||| |||| || ||||| || ||| | ||| ||||||||||||| ||    
T  40439611 aatatgtatttcatccttgcaattaatgggtcgtttaaaaattgatcatgtattcgctaatccttgcaaactaacctctcaaagtttaatcatttaaaaa 40439512  T
Q  248 ttggt 252  Q
    |||||    
T  40439511 ttggt 40439507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 46900029 - 46899977
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc 194  Q
    |||||| ||||||| |||| ||| || ||||||||||||| ||||||||||||    
T  46900029 aggcttaaatatgtatttcatccatgcaattaagggtcatttaaaaattggtc 46899977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 32687396 - 32687499
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||| ||||||||||||||| |||||||||| |||||  |||| ||||||||    
T  32687396 aggctttaatatgtgttttgtccttgtaattaggggtcatttaaaatttggtccctgtaatcgttaatcctggcaaattgcccttgcaaatattaatcat 32687495  T
Q  241 ttaa 244  Q
    ||||    
T  32687496 ttaa 32687499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 10092298 - 10092215
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||| ||||||||||| ||||||||||||||    
T  10092298 taggctttaatatgtgtttcgtccctgtaattaggggtcatgtaaaaatcggtccctataatcgttaatcctggcaaattaccc 10092215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 32688651 - 32688544
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaa 236  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||| ||||| ||||||| |||||||| |||| ||| |||||| |||||  |||| ||||    
T  32688651 aaataggctttaatatgtgtttcgcccttgcaattaggggtcatttaaaatttggtccttgtaatcgctaatcctgacaaattgcccttgcaaatattaa 32688552  T
Q  237 tcatttaa 244  Q
    ||||||||    
T  32688551 tcatttaa 32688544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 18856082 - 18855980
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    |||||| |||| |||||||||| || ||||| ||||||| ||||||||||||| |||||||||||||  |||||||||||||||  ||| ||||||||||    
T  18856082 ggctttgatatatgtttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcttggcaaattacccttgcaaagtttaatcatt 18855983  T
Q  242 taa 244  Q
    |||    
T  18855982 taa 18855980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 5457337 - 5457233
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||||| |||| |||||||| || |||||||||||||| ||  ||||||||    
T  5457337 taggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccttgtattcgttaatccttgcaaattaccctttcaatgtttaatca 5457238  T
Q  240 tttaa 244  Q
    |||||    
T  5457237 tttaa 5457233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 28469441 - 28469353
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| ||||||||||||||| ||||||| ||||||||    
T  28469441 aaataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctggcaatttaccctt 28469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 18087766 - 18087664
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||||||||||||||| ||||||| ||||| ||||||| |||||||||||| ||||||||| |||| || ||||| || ||||  || | |||||||||    
T  18087766 ggctttaatatgtgtttagtccttgcaattaggggtcatttaaaaattggtcactgtaatcgctaatccttgcaaaatagccttgcaattattaatcatt 18087667  T
Q  242 taa 244  Q
    |||    
T  18087666 taa 18087664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 22828242 - 22828144
Alignment:
Q  147 ttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||| ||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||  || |||||||||| |  |||  ||||||||||||    
T  22828242 ttaaaatgtgtttcatccttgtaattaggggtcatttaaaaattggtccttgtaatcgttaatcttgacaaattacccctgcaaaccttaatcatttaa 22828144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 19204488 - 19204572
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||||| ||||||||||||||||||||| ||||||||    
T  19204488 aggcttaaatatgtatttgatccttgaaattaggggtcgtttaaaaattggtccctgtaatcgttaattctggcaatttaccctt 19204572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 17886922 - 17886816
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaat 237  Q
    ||||||||| ||||||| |||| |||||| ||||| || |||| ||||||||| ||| |||| |||||||| || ||||| |||||||  |||| |||||    
T  17886922 aataggcttaaatatgtatttcatccttgcaattagggatcatttaaaaattgatccatgtattcgttaatccttgcaaactacccttgcaaatattaat 17886823  T
Q  238 catttaa 244  Q
    |||||||    
T  17886822 catttaa 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 22081569 - 22081642
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||||| |||||| |||| ||||||| ||||||||    
T  22081569 atgtgtttcgtccttgcaattatgcgtcatttaaaaattagtcctctaatcgctaatgctggcaatttaccctt 22081642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 6764175 - 6764263
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgt---aattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| |||||||||||||||| ||    ||||| ||||||| ||||||||||| ||||||||| |||||| || ||||||||||||    
T  6764175 taggcttaaatatgtgtttcgtccctgctgcaattaggggtcatttaaaaattggttcctgtaatcattaattttgacaaattaccctt 6764263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 42618328 - 42618254
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaatt-ggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| | ||||||||||| |||| ||||||| ||||||||    
T  42618328 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagttcctgtaatcgctaatcctggcaatttaccctt 42618254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 43266275 - 43266349
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| ||||||||||||| ||| ||| ||||||||    
T  43266275 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctgacaatttaccctt 43266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 43266683 - 43266609
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||||||| ||| ||||||||    
T  43266683 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgctaattctgacaatttaccctt 43266609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 46205726 - 46205652
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||| |||| |||||| | |||| |||| |||||| ||||||||||||||| ||| ||||||||||||    
T  46205726 atgtgtttcgttcttgcaattaatgatcatttaaagattggttcctgtaatcgttaatcctgacaaattaccctt 46205652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 13050211 - 13050126
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||||||||||||||||| ||||| | || || | ||| || || ||||||||||||||| |||| || ||||||||    
T  13050211 taggctttaatatgtgtttcgtccttgcaattaggcgtaattttaaatttcgtccctgtaatcgttaatcctggtaatttaccctt 13050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 18086287 - 18086372
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||||||||||| ||||||| ||||| | ||| | ||||||||||| ||||||| || |||| || |||||||| ||||    
T  18086287 taggctttaatatgtgtttagtccttgcaattaggagtcgtttaaaaattggtccctgtaaacgataatccttgcaaattagcctt 18086372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 6571012 - 6571096
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| ||||||||||||||| ||| ||| ||||||||    
T  6571012 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgttaatcctgacaatttaccctt 6571096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 2640598 - 2640523
Alignment:
Q  151 tatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| |||| ||||| |||||| ||||| | |||||||||| | ||||||||| |||||||||||| ||||||||    
T  2640598 tatgtatttcatccttataattaggggtcgtttaaaaattggcctctgtaatcgctaattctggcaatttaccctt 2640523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 10935794 - 10935877
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||| ||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  10935794 ggcttaaatgtgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 10935877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 13384501 - 13384604
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcat 240  Q
    ||||||||||| ||||||| ||| || |||||||||||   ||||| ||||| |||||||||| |||| || ||||| |||||||  |||  ||||||||    
T  13384501 aggctttaataagtgtttcatccctgcaattaagggtcgcttaaaatttggtccctgtaatcgctaatcctagcaaactacccttgcaaacgttaatcat 13384600  T
Q  241 ttaa 244  Q
    ||||    
T  13384601 ttaa 13384604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 42362450 - 42362533
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| | ||| | ||||||||||||| |||| |||||||| || |||||||||||||    
T  42362450 ggcttaaatatgtatttcatccttgcaattaggtgtcgtttaaaaattggtccttgtattcgttaatccttgcaaattaccctt 42362533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 17102019 - 17102101
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||    
T  17102019 aggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccc 17102101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 25453545 - 25453471
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||| ||||||||||| ||||| |||||||| || |||| ||||| |||| || |||| ||||||||    
T  25453545 atgtgtttcgtctttgtaattaagcgtcatttaaaaattagtccctgaaatcgctaatcctagcaatttaccctt 25453471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 32068105 - 32068179
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| |||||   ||||| |||||||| |||| |||||||| |||| ||||||| ||||||||    
T  32068105 atgtgtttcgtccttgcaattagacgtcatttaaaaattagtccttgtaatcgctaatcctggcaatttaccctt 32068179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 10600035 - 10600100
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaa 216  Q
    |||||||||||||||| ||||| | ||||| |||||||| || ||| ||||||||||| |||||||    
T  10600035 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctataatcgttaatcctggcaa 10600100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 20425474 - 20425607
Alignment:
Q  139 aataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattgg-tcctgtaatcgttaattctggcaaattacccttttaaattttaat 237  Q
    ||||||||| |||||||  ||| ||| || ||||| || |||| |||||||||| || |||||||| ||||  ||||||| |||||| | ||| ||||||    
T  20425474 aataggcttaaatatgtaattcatccctgcaattagggatcatttaaaaattggttcatgtaatcgataatcttggcaaactaccctctcaaaatttaat 20425573  T
Q  238 catttaagaattggtttctcaacctagttaatca 271  Q
    || |||| | || ||  ||||||| |||||||||    
T  20425574 cacttaaaatttcgtccctcaaccaagttaatca 20425607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 23058846 - 23058773
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattaccct 224  Q
    |||||||||||||||| ||||  | ||||| ||||||||  |||| |||||||||||| ||||||| |||||||    
T  23058846 atgtgtttcgtccttgcaattcggcgtcatttaaaaattaatccttgtaatcgttaatcctggcaatttaccct 23058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 42731419 - 42731500
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccc 223  Q
    ||||| ||||||| | || |||||| ||||| ||||| | ||||||||||||| |||||||| |||| ||||||| ||||||    
T  42731419 ggcttaaatatgtatctcatccttgcaattaggggtcgtttaaaaattggtccttgtaatcgctaatcctggcaatttaccc 42731500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 6253472 - 6253552
Alignment:
Q  144 gctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccc 223  Q
    |||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||    
T  6253472 gcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccc 6253552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 18855408 - 18855476
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaat 208  Q
    ||||||||||||||| |||||||| || || || ||||||| |||||| |||| ||| |||||||||||    
T  18855408 taggctttaatatgtttttcgtccctgcaaataggggtcatttaaaaaatggtccctataatcgttaat 18855476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 22871706 - 22871622
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||  |||||| ||||| ||||||| ||||||||||| |||||||| | |||| || |||| ||||||||    
T  22871706 aggcttaaatatgtatttgatccttgcaattaggggtcatttaaaaattggtccctgtaatagctaatccttgcaatttaccctt 22871622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 23608808 - 23608860
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||| |||||||||| ||||||| || || ||||||| |||||||||||||    
T  23608808 ggcttttatatgtgtttagtccttgcaaataggggtcatttaaaaattggtcc 23608860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 27397025 - 27396957
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaat 208  Q
    ||||||| ||||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||| ||||    
T  27397025 taggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaat 27396957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 29144412 - 29144348
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgtt 205  Q
    ||||||| ||||||| |||||||| || ||||| ||||| | |||||||||||| | ||||||||    
T  29144412 taggcttaaatatgtatttcgtccctgcaattaggggtcgtttaaaaattggtcatataatcgtt 29144348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 48789180 - 48789148
Alignment:
Q  193 tcctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||||||||||| ||||||||    
T  48789180 tcctgtaatcgttaattctggcaatttaccctt 48789148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 239979 - 239877
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    |||||| |||||||||||||||||| | ||| ||||||| ||||||||||| |||||||||| |||| ||||||||||||||||  ||| ||||||||||    
T  239979 ggcttttatatgtgtttcgtccttgcacttaggggtcatttaaaaattggttcctgtaatcgataatcctggcaaattacccttccaaagtttaatcatt 239880  T
Q  242 taa 244  Q
    |||    
T  239879 taa 239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 15116660 - 15116532
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcct-gtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||||||||||| ||||||||||| ||||| ||||| | |||||||||||||| ||||||| |||| || ||||| || ||||  ||| ||||||||||    
T  15116660 ggctttaatatgtatttcgtccttgcaattaggggtcgtttaaaaattggtcctcgtaatcgctaatccttgcaaactagccttgcaaagtttaatcatt 15116561  T
Q  242 taagaattggtttctcaacctagttaatc 270  Q
    ||| |||||||  ||||||| ||||||||    
T  15116560 taaaaattggtccctcaacccagttaatc 15116532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 28498456 - 28498351
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||||||||||||||||||||||| || ||||| || |||| ||||||||||||| |||||||| |||| |||||||| ||||||   ||| |||||||    
T  28498456 ataggctttaatatgtgtttcgtccctgcaattagggctcatttaaaaattggtccttgtaatcgctaatcctggcaaactaccctcccaaagtttaatc 28498357  T
Q  239 atttaa 244  Q
    ||||||    
T  28498356 atttaa 28498351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 24210543 - 24210633
Alignment:
Q  155 tgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||| |||||||| ||||||| |||||||||||| ||||||| ||||||  | |||||||||||||  ||| |||||||||||||    
T  24210543 tgtttcgtccctgtaattaggggtcatttaaaaattggtctctgtaattgttaatcatagcaaattacccttgcaaagtttaatcatttaa 24210633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 29810867 - 29810762
Alignment:
Q  140 ataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatc 238  Q
    ||||||||||||||||||||||||| || ||||| || |||| ||||||||||||| |||||||  ||||  ||||||| ||||||   ||| |||||||    
T  29810867 ataggctttaatatgtgtttcgtccctgcaattagggctcatttaaaaattggtccttgtaatcactaatcatggcaaactaccctcccaaagtttaatc 29810768  T
Q  239 atttaa 244  Q
    ||||||    
T  29810767 atttaa 29810762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 26463177 - 26463281
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    ||||||| ||||||| |||  ||| || ||||| ||||| | ||||||||||||| |||| |||||||| ||||||||||||||||  ||| ||||||||    
T  26463177 taggcttaaatatgtatttgatccctgcaattaggggtcgtttaaaaattggtccctgtattcgttaatcctggcaaattacccttgcaaagtttaatca 26463276  T
Q  240 tttaa 244  Q
    |||||    
T  26463277 tttaa 26463281  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 139807 - 139872
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaat 208  Q
    |||||||||||||||||| || | |||||||| ||||||| |||||||||||| |||||||||||||    
T  139807 aggctttaatatgtgttttgttcctgtaatta-gggtcatttaaaaattggtcatgtaatcgttaat 139872  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 147828 - 147893
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaat 208  Q
    |||||||||||||||||| || | |||||||| ||||||| |||||||||||| |||||||||||||    
T  147828 aggctttaatatgtgttttgttcctgtaatta-gggtcatttaaaaattggtcatgtaatcgttaat 147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 7905252 - 7905326
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| ||||||||||||| ||||||| ||||||||    
T  7905252 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgttaatcctggcaatttaccctt 7905326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 15913965 - 15913893
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccc 223  Q
    |||||||||||||||| ||||||||||||| |||||||| |||| | |||||||||||  ||| |||||||||    
T  15913965 atgtgtttcgtccttgcaattaagggtcatttaaaaatttgtccatataatcgttaatcttggaaaattaccc 15913893  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 3176429 - 3176376
Alignment:
Q  170 attaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacc 222  Q
    |||| ||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  3176429 attaggggtcatttaaaaattggtcactgtaatcgttaattctgtcaaattacc 3176376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 21836041 - 21836114
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||| |||| ||||| | ||||| |||||||| ||| |||||||| |||| ||||||| ||||||||    
T  21836041 atgtgtttcgttcttgcaattaggcgtcatttaaaaattagtcttgtaatcgctaatcctggcaatttaccctt 21836114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 26464627 - 26464498
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||| ||| || ||||| ||||||| |||||| |||||| |||| | |||||| ||||||| || ||||  ||||  ||||||| |    
T  26464627 ggcttaaatatgtatttcatccctgcaattaggggtcatttaaaaaatggtccctgtatttgttaatcctggcaattttccctcctaaaaattaatcact 26464528  T
Q  242 taagaattggtttctcaacctagttaatca 271  Q
    ||| ||||| |  |||||||||||||||||    
T  26464527 taaaaattgatccctcaacctagttaatca 26464498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 30337447 - 30337532
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| ||||||| |||  |||||| ||||| ||||| | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  30337447 taggcttaaatatgtatttgatccttgcaattaggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 30337532  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 33517540 - 33517617
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||| |||| |||||||||||| || || | ||||||||||| |||||||||| |||| ||||||| ||||||||    
T  33517540 aatatgtatttcatccttgtaattagggatcgtttaaaaattggtccctgtaatcgctaatcctggcaatttaccctt 33517617  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 141162 - 141066
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||||||||||||||||| |||||   || || |||||||| || ||||||||||||||| || ||||||||| |||  |||  ||||||||||||    
T  141162 aatatgtgtttcgtccttgcaattagatgttatttaaaaatttgttcctgtaatcgttaatccttgcaaattactcttgcaaaaattaatcatttaa 141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 149183 - 149087
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    ||||||||||||||||||| |||||   || || |||||||| || ||||||||||||||| || ||||||||| |||  |||  ||||||||||||    
T  149183 aatatgtgtttcgtccttgcaattagatgttatttaaaaatttgttcctgtaatcgttaatccttgcaaattactcttgcaaaaattaatcatttaa 149087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 8090357 - 8090253
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    ||||||| ||||||| || | |||||| ||||| ||||| | ||||||||||||| |||| ||  |||| || |||||||||||||  ||| ||||||||    
T  8090357 taggcttaaatatgtattacatccttgcaattaggggtcgtttaaaaattggtccttgtattcactaatccttgcaaattacccttgcaaagtttaatca 8090258  T
Q  240 tttaa 244  Q
    |||||    
T  8090257 tttaa 8090253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 13378527 - 13378654
Alignment:
Q  145 ctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcattta 243  Q
    ||||||||||| |||  ||| || || || ||||||| |||||| |||||| |||| | |||||| ||||||| || ||||  |||| |||||||| |||    
T  13378527 ctttaatatgtatttactccctgcaaataggggtcatttaaaaaatggtccttgtatttgttaatcctggcaatttgccctcctaaaatttaatcactta 13378626  T
Q  244 agaattggtttctcaacctagttaatca 271  Q
    | |||||||  ||||||| |||||||||    
T  13378627 aaaattggtccctcaacccagttaatca 13378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7160813 - 7160883
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattac 221  Q
    |||||||||||||||| ||||| | ||||| |||||||| ||| ||||||||| |||| ||||||| ||||    
T  7160813 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgctaatcctggcaatttac 7160883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 7905660 - 7905586
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| || ||||| |||| | |||||| |||||||||||| ||||||||    
T  7905660 atgtgtttcgtccttgcaattaggtgtcatttataaatttgtccctataatcgctaattctggcaatttaccctt 7905586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 15115339 - 15115441
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatt 241  Q
    ||||| ||||||| |||| |||||| |||||  | || | ||||||||||||| | ||||||||||| || |||||||| ||||  ||| ||||||||||    
T  15115339 ggcttaaatatgtatttcatccttgcaattagagatcgtttaaaaattggtccctataatcgttaatccttgcaaattagccttgcaaagtttaatcatt 15115438  T
Q  242 taa 244  Q
    |||    
T  15115439 taa 15115441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 22502783 - 22502857
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||| ||| ||| ||||||||    
T  22502783 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctgacaatttaccctt 22502857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 22503191 - 22503117
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| |||||||| |||| ||||||| ||| ||||    
T  22503191 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgctaatcctggcaatttatcctt 22503117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 31406887 - 31406949
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctgg 213  Q
    |||||||||||||||| ||||| | ||||| |||||||| || ||||||||||||||| ||||    
T  31406887 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctgg 31406949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 30726192 - 30726135
Alignment:
Q  138 aaataggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc 195  Q
    |||||||||| ||||||| |||| |||||| ||||| ||||| | |||||||||||||    
T  30726192 aaataggcttaaatatgtatttcatccttgcaattaggggtcgtttaaaaattggtcc 30726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 8089442 - 8089526
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| || | ||| || ||||| ||||| | ||||||||||||| | ||||||||||| || |||||||||||||    
T  8089442 aggcttaaatatgtattacctccctgcaattaggggtcgtttaaaaattggtccctataatcgttaatccttgcaaattaccctt 8089526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 21628142 - 21628058
Alignment:
Q  142 aggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    |||||| ||||||| |||| |||||| ||||| |||||   ||||||||||| |||||||||| |||| ||| ||| ||||||||    
T  21628142 aggcttaaatatgtatttcatccttgcaattaggggtcgcttaaaaattggtccctgtaatcgctaatcctgacaatttaccctt 21628058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 12656 - 12582
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    |||||||||||||||| ||||| | ||||| |||||||| |||| ||||||||||||| ||||||| ||||||||    
T  12656 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcctggcaatttaccctt 12582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 6400 - 6304
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattacccttttaaattttaatcatttaa 244  Q
    |||||||||||| |||||| ||||| ||||||  ||||||||||||| | |||||| |||| || |||||||||||||  ||  |||||||||||||    
T  6400 aatatgtgtttcttccttgaaattaggggtcacttaaaaattggtccttataatcgataatccttgcaaattacccttgcaatgtttaatcatttaa 6304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 68965 - 69048
Alignment:
Q  143 ggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||| ||||||| |||| |||||| ||||| ||||||| ||||||||||| |||||||||  |||| ||||||| ||||||||    
T  68965 ggcttaaatatgtatttcatccttgcaattaggggtcatttaaaaattggtccctgtaatcactaatcctggcaatttaccctt 69048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 11557 - 11483
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcc-tgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||| |||||| ||||| | ||||| |||||||| |||| ||||||||||||| ||||||| ||||||||    
T  11557 atgtgtttcatccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcctggcaatttaccctt 11483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 221800 - 221873
Alignment:
Q  152 atgtgtttcgtccttgtaattaagggtcatctaaaaattggtcctgtaatcgttaattctggcaaattaccctt 225  Q
    ||||||||||| |||| ||||| | ||||| |||||||| ||| |||||||| |||| ||||||| ||||||||    
T  221800 atgtgtttcgttcttgcaattaggcgtcatttaaaaattagtcttgtaatcgctaatcctggcaatttaccctt 221873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 19863 - 19937
Alignment:
Q  149 aatatgtgtttcgtccttgtaattaagggtcatctaaaaattggt-cctgtaatcgttaattctggcaaattacc 222  Q
    ||||||| ||||||||||| ||||| ||||| | ||||||||||| ||||| |||| |||| || ||||||||||    
T  19863 aatatgtatttcgtccttgcaattatgggtcgtttaaaaattggtccctgtgatcgctaatccttgcaaattacc 19937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 23229 - 23346
Alignment:
Q  141 taggctttaatatgtgtttcgtccttgtaattaagggtcatctaaaaattggtc-ctgtaatcgttaattctggcaaattacccttttaaattttaatca 239  Q
    |||||||| ||||||||||||||| || || || | ||||| ||||||||||||  |||| | |||||| ||| |||  || ||||  ||| ||||||||    
T  23229 taggctttgatatgtgtttcgtccctgcaaatatgagtcatttaaaaattggtctatgtatttgttaatcctgtcaatctatccttccaaagtttaatca 23328  T
Q  240 tttaagaattggtttctc 257  Q
    ||||| | ||||||||||    
T  23329 tttaaaatttggtttctc 23346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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