View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_160 (Length: 255)
Name: NF0809_low_160
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_160 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 53089325 - 53089128
Alignment:
| Q |
1 |
ttaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggc |
100 |
Q |
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| T |
53089325 |
ttaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggc |
53089226 |
T |
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| Q |
101 |
acccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatga |
198 |
Q |
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| T |
53089225 |
acccttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatga |
53089128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 53089114 - 53089069
Alignment:
| Q |
195 |
atgaattttagcgagtataagtatgctatatgcattacattaccag |
240 |
Q |
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| T |
53089114 |
atgaattttagcgagtataagtatgctatatgcatcacattaccag |
53089069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 14334034 - 14333826
Alignment:
| Q |
1 |
ttaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggt---------gttgagaagt |
91 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |
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| T |
14334034 |
ttaatgatggaatttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagt |
14333935 |
T |
|
| Q |
92 |
tggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| |||||||||||| |
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| T |
14333934 |
tggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttcc |
14333835 |
T |
|
| Q |
192 |
atgatgaat |
200 |
Q |
| |
|
||||||||| |
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| T |
14333834 |
atgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 14333814 - 14333769
Alignment:
| Q |
195 |
atgaattttagcgagtataagtatgctatatgcattacattaccag |
240 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccag |
14333769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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