View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_161 (Length: 254)

Name: NF0809_low_161
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_161
NF0809_low_161
[»] chr3 (2 HSPs)
chr3 (47-239)||(17117617-17117810)
chr3 (1-37)||(17117826-17117861)
[»] chr6 (2 HSPs)
chr6 (49-88)||(10301834-10301873)
chr6 (47-92)||(1110392-1110437)
[»] chr7 (1 HSPs)
chr7 (50-87)||(47188625-47188662)
[»] chr8 (1 HSPs)
chr8 (48-88)||(13266922-13266962)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 17117810 - 17117617
Alignment:
Q  47 gagaaaaatatatacaagagggagaccaaaccaaaaccctcagaagacacgtaaaaagaacnnnnnnnnnnnn-ccatatgggaacctataaataggtag 145  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||    
T  17117810 gagaaaaatatatataagagggagaccaaatcaaaaccctcagaagacatgtaaaaagaacaaaaaaaaaaaaaccatatgggaacctataaataggtag 17117711  T
Q  146 acccgtgcagtctcaggagaagtcctatgacagaaaccaaggtaacgaatccaaccaaatggtgccagnnnnnnngtgaccataatttgctaat 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||       |||||||||||||||||||    
T  17117710 acccgtgcggtctcaggagaagtcctatgacagaaaccaaggtaacgaatccaattaaatggtgccagaaaaagagtgaccataatttgctaat 17117617  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17117861 - 17117826
Alignment:
Q  1 cctccatccactagcaccttatccaatatatattatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17117861 cctccatccactagcaccttatcc-atatatattatt 17117826  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 10301834 - 10301873
Alignment:
Q  49 gaaaaatatatacaagagggagaccaaaccaaaaccctca 88  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  10301834 gaaaaatatatacaagagggggaccagaccaaaaccctca 10301873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 1110437 - 1110392
Alignment:
Q  47 gagaaaaatatatacaagagggagaccaaaccaaaaccctcagaag 92  Q
    ||||||| |||||||||||||| ||| | |||||||||||||||||    
T  1110437 gagaaaagtatatacaagagggggactagaccaaaaccctcagaag 1110392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 47188662 - 47188625
Alignment:
Q  50 aaaaatatatacaagagggagaccaaaccaaaaccctc 87  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  47188662 aaaaatatgtacaagagggggaccaaaccaaaaccctc 47188625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 13266962 - 13266922
Alignment:
Q  48 agaaaaatatatacaagagggagaccaaaccaaaaccctca 88  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  13266962 agaaaaatatgtataagagggggaccaaaccaaaaccctca 13266922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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