View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_162 (Length: 254)
Name: NF0809_low_162
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_162 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 9372752 - 9372957
Alignment:
| Q |
33 |
ctattggctggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatata |
132 |
Q |
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| T |
9372752 |
ctattggctggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatata |
9372851 |
T |
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| Q |
133 |
tgatcaaacacagacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcatatacaacacatctc |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9372852 |
tgatcaaacacagacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcatatagaacacatctc |
9372951 |
T |
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| Q |
233 |
tgagta |
238 |
Q |
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|||||| |
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| T |
9372952 |
tgagta |
9372957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 9366839 - 9367024
Alignment:
| Q |
33 |
ctattggctggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatata |
132 |
Q |
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||||| |||||||||||||||| ||| | |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
9366839 |
ctatttgctggcatgttccattcttgagaagctacaactgctatatgattt-aaagaatggatttcagaaggatgagatccagatcttgttggatataca |
9366937 |
T |
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| Q |
133 |
tgatcaaacacagacaacaatatcaattatatataatttttatgttattattacaattgaaatcatgtagcatgcagctccttcata |
219 |
Q |
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| T |
9366938 |
tgaccaaaaacagacagcaatatcaattatatgtattttttattttattattacaactgaaagcttgtagcatgcagctccttcata |
9367024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 9309164 - 9309301
Alignment:
| Q |
33 |
ctattggctggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatata |
132 |
Q |
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|||||| ||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9309164 |
ctattgtctggcatgttccattgttgaggagcaagaactgctatatggttttaaagaatggatttcagaaggatgagatccagatcttgagggatat--- |
9309260 |
T |
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| Q |
133 |
tgatcaaac-acagacaacaatatcaattatatataattttt |
173 |
Q |
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| T |
9309261 |
-gatcaaaagacagacaacaatatcagttatatataactttt |
9309301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 9289224 - 9289145
Alignment:
| Q |
84 |
taaagaatggatttcagaaggatgagatccagatcttgtgggatatatatgatc-aaacacagacaacaatatcaattat |
162 |
Q |
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| T |
9289224 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
9289145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 9298412 - 9298289
Alignment:
| Q |
35 |
attggctggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatatatg |
134 |
Q |
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|||||||||||||||||||||||| ||| ||| |||||| | ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| | |
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| T |
9298412 |
attggctggcatgttccattgttgaggaactagaactgcaaaatggttt-aaagaatgaatttttgaaggatgagatccagatcttgagggatat----g |
9298318 |
T |
|
| Q |
135 |
atcaaac-acagacaacaatatcaattat |
162 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
9298317 |
atcaaaagacagacaacaatatcaattat |
9298289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 9348232 - 9348341
Alignment:
| Q |
60 |
ggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatatatatgatc-aaacacagacaacaatatcaa |
158 |
Q |
| |
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||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||| |
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| T |
9348232 |
ggagctagaactgttaaatggttt-aaagaatggatttcagaaggatgagatccagatcttgagg----tatatgatcaaaagacagacaacaatatcag |
9348326 |
T |
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| Q |
159 |
ttatatataattttt |
173 |
Q |
| |
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|||||||||| |||| |
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| T |
9348327 |
ttatatataactttt |
9348341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 9355694 - 9355781
Alignment:
| Q |
41 |
tggcatgttccattgttgcggagctacaactgctacatggttttaaagaatggatttcagaaggatgagatccagatcttgtgggatat |
129 |
Q |
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||||||||| ||| ||| ||||||| ||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9355694 |
tggcatgtttcatatttgaggagctagaactgggaaatggttt-aaagaatggattttagaaggatgagatccagatcttgtgggatat |
9355781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 9293730 - 9293687
Alignment:
| Q |
84 |
taaagaatggatttcagaaggatgagatccagatcttgtgggat |
127 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9293730 |
taaagaatggattttagaaggatgagatccagatcttgtgggat |
9293687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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