View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_17 (Length: 640)
Name: NF0809_low_17
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 366
Target Start/End: Original strand, 24492061 - 24492408
Alignment:
| Q |
29 |
aggagttttactctgaactgggttaccaaattcttgtgttcattcttcattttctttcgtttatgtgcctgcctttctt---caagtaaattgcattttt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
24492061 |
aggagttttactctgaactgggttaccaaattcttgtgttcattcttcattttctttcgtttatgtgcctgcctttcttcaacaaatgaattgcattttt |
24492160 |
T |
|
| Q |
126 |
caattat--cgcatgttcatcattgatct---caattgattttagttaatcatggacaagtacaaaaaatggcctcaggtttcaatgcaaactactaatt |
220 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24492161 |
caattatcgcgcatgttcatcattgatctcaacaattgattttagttaatcatggacaggtacaaaaaatggcctcaggtttcaatgcaaactgctaatt |
24492260 |
T |
|
| Q |
221 |
taactacaggatgggaatgaagcacaagttttagattgtgtcattgtgactactaactagatatagagcataagcat---gtcttgaagtgctagatata |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
24492261 |
t--ctacaggatgggaatgaagcacaagttttagattgtgtcattgtgactactaactagatatatagcataagcattgcatcttgcagtgctagatata |
24492358 |
T |
|
| Q |
318 |
tgtcattgaagcaacacccc-tctatgctcttggtatctactcaattttg |
366 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24492359 |
tgtcattgaagcgacaccccttctgtgctcttggtatctactcaattttg |
24492408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 358 - 573
Target Start/End: Original strand, 24492451 - 24492668
Alignment:
| Q |
358 |
tcaattttgattcattggaatatcgtacgaaataaaaattattattcatttatggaactcaattcatagtctgttactgatcattaagcaccaaaataac |
457 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24492451 |
tcaatattgattcattggaatatcgtgcgaaataaaaattattattcatttatggaactcaattcatagtctgttactgatcattaagcaccaaaataac |
24492550 |
T |
|
| Q |
458 |
gtgaaacttggccatag--agatataagggtaaattttgtattgaattattttaatgtgaactcaattcacactctaggtgaagctccacaagtagttca |
555 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24492551 |
gtgaaacttggccatagatagagataagggtaaattttgtattgaattattttaatgtgaactcaattcacactctaggtgaaggtccacaagtagttca |
24492650 |
T |
|
| Q |
556 |
aactcattttcaaatcga |
573 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24492651 |
aactcattttcaaatcga |
24492668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 24495370 - 24495427
Alignment:
| Q |
29 |
aggagttttactctgaactgggttaccaaattcttgtgttcattcttcattttctttc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
24495370 |
aggagttttactctgaactgggttaccaaattcttgtgctcatccttcattttctttc |
24495427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 24495521 - 24495589
Alignment:
| Q |
156 |
ttgattttagttaatcatggacaagtacaaaaaatggcctc--aggtttcaatgcaaactactaattta |
222 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||| |||||||||||| || ||| |||||| |
|
|
| T |
24495521 |
ttgattttagtgaatcatggaaaaatacaaaaaatggcctcagaggtttcaatgctaattacaaattta |
24495589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 24495671 - 24495702
Alignment:
| Q |
254 |
gattgtgtcattgtgactactaactagatata |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24495671 |
gattgtgtcattgtgactactaactagatata |
24495702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4797 times since January 2019
Visitors: 5752