View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_171 (Length: 252)

Name: NF0809_low_171
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_171
NF0809_low_171
[»] chr5 (2 HSPs)
chr5 (1-245)||(24847135-24847379)
chr5 (126-186)||(11997168-11997228)
[»] chr8 (2 HSPs)
chr8 (31-198)||(13529057-13529223)
chr8 (31-198)||(13618596-13618762)
[»] chr7 (8 HSPs)
chr7 (59-176)||(12357834-12357949)
chr7 (1-198)||(19138860-19139050)
chr7 (1-198)||(20738259-20738449)
chr7 (76-184)||(7325970-7326078)
chr7 (155-212)||(22335122-22335179)
chr7 (94-186)||(10053924-10054016)
chr7 (125-173)||(21236232-21236280)
chr7 (54-110)||(23745279-23745335)
[»] chr6 (4 HSPs)
chr6 (61-197)||(20975145-20975282)
chr6 (76-186)||(3407702-3407811)
chr6 (28-173)||(13279082-13279224)
chr6 (76-198)||(13829895-13830016)
[»] chr1 (4 HSPs)
chr1 (2-163)||(31318486-31318645)
chr1 (31-173)||(13153453-13153593)
chr1 (61-186)||(13806779-13806904)
chr1 (58-166)||(14932339-14932447)
[»] chr3 (2 HSPs)
chr3 (61-186)||(21654718-21654844)
chr3 (61-121)||(25782160-25782220)
[»] scaffold0999 (1 HSPs)
scaffold0999 (31-173)||(2718-2858)
[»] chr4 (4 HSPs)
chr4 (5-183)||(25367524-25367701)
chr4 (127-182)||(13273512-13273567)
chr4 (128-174)||(17331671-17331717)
chr4 (2-186)||(24912216-24912398)
[»] chr2 (3 HSPs)
chr2 (125-176)||(29770149-29770200)
chr2 (86-175)||(16857616-16857704)
chr2 (59-212)||(14962692-14962845)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 24847379 - 24847135
Alignment:
Q  1 aagcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24847379 aagcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgt 24847280  T
Q  101 ttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24847279 ttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctagat 24847180  T
Q  201 gtgataaacgaatattctgatttggcccatttatgacctatgata 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24847179 gtgataaacgaatattctgatttggcccatttatgacctatgata 24847135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 11997168 - 11997228
Alignment:
Q  126 gattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactatta 186  Q
    |||||| || || ||||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  11997168 gattagagtatcattgaatcccctctaccttttttgttggaattaactcggtttaatatta 11997228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 13529057 - 13529223
Alignment:
Q  31 aagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgatta 130  Q
    |||||| | |||||||| || ||||||||||||||||||||||| | |||||| |||||| |||||| |||| |||| |||| |  ||||| | ||||||    
T  13529057 aagcaaattaaagagaaataaggttttggtttgcaagttttgatttatcttgcacaatgcaagattaggtttgtttggttcagaagattaacgatgatta 13529156  T
Q  131 gggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctag 198  Q
    | ||||| ||||||| ||||||| |||||||||| |||||| ||  |||||||||| ||| |||||||    
T  13529157 gagtttccttgaatc-cctctacattctttgttgaaattaattcaagttactattagttatgacctag 13529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 13618596 - 13618762
Alignment:
Q  31 aagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgatta 130  Q
    |||||| | |||||||| || ||||||||||||||||||||||| | |||||| |||||| |||||| |||| |||| |||| |  ||||| | ||||||    
T  13618596 aagcaaattaaagagaaataaggttttggtttgcaagttttgatttatcttgcacaatgcaagattaggtttgtttggttcagaagattaacgatgatta 13618695  T
Q  131 gggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctag 198  Q
    | ||||| ||||||| ||||||| |||||||||| |||||| ||  |||||||||| ||| |||||||    
T  13618696 gagtttccttgaatc-cctctacattctttgttgaaattaattcaagttactattagttatgacctag 13618762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 12357834 - 12357949
Alignment:
Q  59 gtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttct 158  Q
    ||||||| |||||||   ||||| |||||||| |||||| ||||  ||||||||||||||||| | ||| ||||||||||||||||| | |||||||||     
T  12357834 gtttgcaggttttgaatagtcttactcaatgcaagattaggttt--ttgattcaaataattaacgatgaatagggtttctttgaatcacatctaccttcg 12357931  T
Q  159 ttgttggaattaactcgg 176  Q
    ||||||||||||||||||    
T  12357932 ttgttggaattaactcgg 12357949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19138860 - 19139050
Alignment:
Q  1 aagcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgt 100  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||||        || ||| ||| |||||||||  |||||||  |||||||| |||||||    
T  19138860 aagcaattaatgaaatttatttgattaggaaagcaattaaaagagt-------ttatgggttgtaagttttgaattgtcttgtacaatgcgaaattatgt 19138952  T
Q  101 ttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctag 198  Q
    || ||||||||| || ||||  |  |||||| ||||| ||||||  ||||||| |||||||||  |||||||| |||||||||||| ||| |||||||    
T  19138953 ttgtttgattcagatgattatcgacgattagagtttccttgaataccctctactttctttgttaaaattaacttgggttactattagttatgacctag 19139050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 20738259 - 20738449
Alignment:
Q  1 aagcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgt 100  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||||        || ||| ||| |||||||||  |||||||  |||||||| |||||||    
T  20738259 aagcaattaatgaaatttatttgattaggaaagcaattaaaagagt-------ttatgggttgtaagttttgaattgtcttgtacaatgcgaaattatgt 20738351  T
Q  101 ttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactattatttaagacctag 198  Q
    || ||||||||| || ||||  |  |||||| ||||| ||||||  ||||||| |||||||||  |||||||| |||||||||||| ||| |||||||    
T  20738352 ttgtttgattcagatgattatcgacgattagagtttccttgaataccctctactttctttgttaaaattaacttgggttactattagttatgacctag 20738449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 7325970 - 7326078
Alignment:
Q  76 tgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcg 175  Q
    |||||||| |||| | |||||| |||| | ||||||||||  |||||   |||||||||||| ||||| | ||||||| ||||||||||||||| |||||    
T  7325970 tgtcttgcacaatacaagattaggtttgtgtgattcaaatgtttaatagagattagggtttccttgaaccccctctacattctttgttggaattcactcg 7326069  T
Q  176 ggttactat 184  Q
    | |||||||    
T  7326070 gattactat 7326078  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 22335122 - 22335179
Alignment:
Q  155 ttctttgttggaattaactcgggttactattatttaagacctagatgtgataaacgaa 212  Q
    ||||||||||||||||||||| |||  ||||| ||| ||||||||| |||||||||||    
T  22335122 ttctttgttggaattaactcgagttgttattagttatgacctagatttgataaacgaa 22335179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 10053924 - 10054016
Alignment:
Q  94 attatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactatta 186  Q
    |||| |||| ||||||||| || |||||   || ||||||| || ||||||| |||||||||| ||||||||||||||||  | |||||||||    
T  10053924 attaggtttgtttgattcagattattaacaatggttagggtatccttgaatcccctctaccttatttgttggaattaacttagtttactatta 10054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 21236280 - 21236232
Alignment:
Q  125 tgattagggtttctttgaatctcctctaccttctttgttggaattaact 173  Q
    ||||||||||||| || |||||| |||||||| ||||||||||||||||    
T  21236280 tgattagggtttccttaaatctcatctaccttatttgttggaattaact 21236232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 23745335 - 23745279
Alignment:
Q  54 ttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgatt 110  Q
    ||||| ||||||| ||||||  ||| |||| ||||||||||||| ||||||||||||    
T  23745335 ttttgttttgcaacttttgaattgttttgcacaatgcgagattaggtttatttgatt 23745279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 20975145 - 20975282
Alignment:
Q  61 ttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatc-tcctctaccttctt 159  Q
    |||||||||||||  |||| | | |||||| |||||| |||| ||||||||| |  |||||||  |||||| ||||| ||||||| ||||||||||||||    
T  20975145 ttgcaagttttgaattgtccttcacaatgcaagattaggtttgtttgattcagaagattaatggcgattagagtttcattgaatcctcctctaccttctt 20975244  T
Q  160 tgttggaattaactcgggttactattatttaagaccta 197  Q
    |||||||||||||| || ||| ||||||||| ||||||    
T  20975245 tgttggaattaacttggtttaatattatttatgaccta 20975282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 3407702 - 3407811
Alignment:
Q  76 tgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcg 175  Q
    |||||||| ||||||||||||||| |  || |||||||||   ||| |  |||||||||||| || | || |||||||||||||| ||| ||||||||||    
T  3407702 tgtcttgcacaatgcgagattatggtgctt-gattcaaatgtataacggcgattagggtttccttcactcccctctaccttctttattgaaattaactcg 3407800  T
Q  176 ggttactatta 186  Q
    | |||||||||    
T  3407801 gtttactatta 3407811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 13279224 - 13279082
Alignment:
Q  28 gaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttga 127  Q
    |||| |||||||||||| | ||| ||||| ||||||||||||   |  |||||| | |||||| |||||| ||||  |||||| | ||||||||  | ||    
T  13279224 gaaatgcaattaaaaga-atttatggtttaggtttgcaagttcgaaattgtcttacacaatgcaagattaagttt--ttgattaagataattaacatcga 13279128  T
Q  128 ttagggtttctttgaatctcctctaccttctttgttggaattaact 173  Q
    ||||  |||| ||||| | ||||||||||| |||||||||||||||    
T  13279127 ttagaatttccttgaaacccctctaccttcgttgttggaattaact 13279082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 13829895 - 13830016
Alignment:
Q  76 tgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcg 175  Q
    |||||||| |||| |||||||||||||  |||||||| || |||||    ||| || ||||| ||||||||  | |||||||||| |||||||||| | |    
T  13829895 tgtcttgcacaattcgagattatgtttgattgattcagatgattaacaacgatcagagtttcattgaatcttatataccttctttcttggaattaa-ttg 13829993  T
Q  176 ggttactattatttaagacctag 198  Q
    | ||||||||| ||| |||||||    
T  13829994 gtttactattagttaggacctag 13830016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 31318486 - 31318645
Alignment:
Q  2 agcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtt 101  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||  |||||||||||||  |||||| |  ||||||||||||| ||    
T  31318486 agcaattaacgaaatttatttgattagaaa-gcaattaaaagagaaatagggttttgtgttgcaagttttgaattgtctttcaaaatgcgagattatttt 31318584  T
Q  102 tatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgtt 163  Q
    | ||||||| | ||  |||||| |||||| | ||| ||  |||| ||||||| |||||||||    
T  31318585 tgtttgatttagatgtttaatggtgattaagattt-ttcaaatcccctctactttctttgtt 31318645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 13153593 - 13153453
Alignment:
Q  31 aagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgatta 130  Q
    ||||||||||| ||||| ||||||| | ||||||||||||||| ||||||||| |||||||||||||  ||| ||||||||| |  ||||| |  |||||    
T  13153593 aagcaattaaa-gagaaatagggttctagtttgcaagttttgaaatgtcttgcacaatgcgagattaaatttgtttgattcagaatattaacgacgatta 13153495  T
Q  131 gggtttctttgaatctcctctaccttctttgttggaattaact 173  Q
     |||||| ||||||| | | |||||| || |||||||||||||    
T  13153494 aggtttccttgaatcccttatacctt-ttagttggaattaact 13153453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 13806779 - 13806904
Alignment:
Q  61 ttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttcttt 160  Q
    ||||||||| |||  |||||||| ||||| || |||| |||| ||||||| | || ||||| |  ||||| |||||| ||||||  | | ||||||||||    
T  13806779 ttgcaagttctgaattgtcttgcacaatgtgaaattaggtttgtttgattaatatgattaacggcgattaaggtttccttgaattccgtttaccttcttt 13806878  T
Q  161 gttggaattaactcgggttactatta 186  Q
    |||||||| |||| || |||||||||    
T  13806879 gttggaatgaactaggtttactatta 13806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 14932339 - 14932447
Alignment:
Q  58 ggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttc 157  Q
    |||||||||||||| |  |||||||| ||||||||||||| ||||  |||||||| |||| ||  |  |||||||||||  ||||||| |||||| |||     
T  14932339 ggtttgcaagtttttaattgtcttgcacaatgcgagattaggtttggttgattcagataagtagcggagattagggttttcttgaatcccctctatcttt 14932438  T
Q  158 tttgttgga 166  Q
    ||| |||||    
T  14932439 tttattgga 14932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 21654844 - 21654718
Alignment:
Q  61 ttgcaagtttt-gatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctt 159  Q
    ||||||||||| ||| |||||||| || |||||||| |||||| |||||| || || ||||||   |||||||||||| ||||||||| || ||||| ||    
T  21654844 ttgcaagttttagatttgtcttgcacactgcgagatcatgtttgtttgatccagatgattaatagagattagggtttccttgaatctcttccaccttatt 21654745  T
Q  160 tgttggaattaactcgggttactatta 186  Q
    |||||||||||||| || |||||||||    
T  21654744 tgttggaattaacttggtttactatta 21654718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 25782160 - 25782220
Alignment:
Q  61 ttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaa 121  Q
    ||||||||||| | |||||||||  ||||||||||||  || ||||||||||||| |||||    
T  25782160 ttgcaagttttaaaatgtcttgcataatgcgagattagcttgatttgattcaaatgattaa 25782220  T

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Target: scaffold0999 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 2858 - 2718
Alignment:
Q  31 aagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgatta 130  Q
    ||||||||||| ||||| ||||||| |||||||||| |||||| ||||||| | ||||||||||||| |||| |||||||||||  ||||| |  |||||    
T  2858 aagcaattaaa-gagaaatagggttctggtttgcaatttttgaaatgtcttccacaatgcgagattaagtttgtttgattcaaaatattaacgacgatta 2760  T
Q  131 gggtttctttgaatctcctctaccttctttgttggaattaact 173  Q
     | |||| ||||||| | | |||||| || |||||||||||||    
T  2759 agatttccttgaatcccttatacctt-ttagttggaattaact 2718  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 25367701 - 25367524
Alignment:
Q  5 aattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttat 104  Q
    |||||||  ||||||||||  || |||  |||||||||||| ||  |||||||| ||||||| ||||||  |||  | | |||||||| |||| ||||      
T  25367701 aattaacaaaatttatttgtttataaacacaattaaaagagtatatgggttttg-tttgcaatttttgaattgttatacacaatgcgatattaagtttgg 25367603  T
Q  105 ttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttacta 183  Q
    |||||||| || |||||   |||||||||| |||||||||| |||||| |||||||||||||||||||| || ||||||    
T  25367602 ttgattcagatgattaacagtgattagggtatctttgaatcccctctatcttctttgttggaattaacttggtttacta 25367524  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 13273512 - 13273567
Alignment:
Q  127 attagggtttctttgaatctcctctaccttctttgttggaattaactcgggttact 182  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||| || |||||    
T  13273512 attagggtatccttgaatctcctctaccttctttgttggaagtaactaggtttact 13273567  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 17331671 - 17331717
Alignment:
Q  128 ttagggtttctttgaatctcctctaccttctttgttggaattaactc 174  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||    
T  17331671 ttagggtatctttgaatcacctctaccttctttgttggagttaactc 17331717  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 24912216 - 24912398
Alignment:
Q  2 agcaattaacggaatttatttgactagaaaagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtt 101  Q
    ||||||||||| ||||||||||  || ||| |||| |||||||| ||  ||||||| |||||||| |||| |  ||| |||| ||||| || |||| |||    
T  24912216 agcaattaacgaaatttatttgtttataaacgcaactaaaagagtatatgggtttt-gtttgcaattttttaattgttttgcacaatgtgatattaggtt 24912314  T
Q  102 tatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcgggttactatta 186  Q
    |  |||||||| || ||||| | ||| | |||| || ||||||| ||| ||  ||||||||||||||||||| |  |||||||||    
T  24912315 tggttgattcagatgattaacggtgact-gggtatccttgaatcccctatatattctttgttggaattaacttgctttactatta 24912398  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 29770200 - 29770149
Alignment:
Q  125 tgattagggtttctttgaatctcctctaccttctttgttggaattaactcgg 176  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  29770200 tgattagggtatccttgaatctcctctatcttctttgttggaattaactcgg 29770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 16857704 - 16857616
Alignment:
Q  86 aatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttctttgttggaattaactcg 175  Q
    ||||||| |||| |||| ||||||||| |||||||| |  ||||| | |||| ||||||| | ||||| |||||||||||||||||||||    
T  16857704 aatgcgatattaggttt-tttgattcagataattaacggcgattatgatttccttgaatcccttctactttctttgttggaattaactcg 16857616  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 212
Target Start/End: Original strand, 14962692 - 14962845
Alignment:
Q  59 gtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgattagggtttctttgaatctcctctaccttct 158  Q
    |||||||| ||||||  ||| || | |||||||| ||||||| | ||||||||| || |||||   |||||||||  || || |||| | || | |||||    
T  14962692 gtttgcaaattttgaattgttttacacaatgcgaaattatgtatgtttgattcagatgattaacagtgattagggcatcctttaatcccatccatcttct 14962791  T
Q  159 ttgttggaattaactcgggttactattatttaagacctagatgtgataaacgaa 212  Q
    ||||||||| |||||||| ||| ||||| ||| ||||| |   |||||||||||    
T  14962792 ttgttggaactaactcggtttattattagttatgaccttgtcttgataaacgaa 14962845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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