View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_18 (Length: 628)
Name: NF0809_low_18
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 9 - 477
Target Start/End: Complemental strand, 925793 - 925329
Alignment:
| Q |
9 |
agcagagatatgatcatgttcagtcttctttctactgatcttcaactatgattaaatatatgtaacaaaattagaggacactttgcatttatcatttaan |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
925793 |
agcagagatatgatcatgttcagtcttctttctactgatattcaactatgattaaatatatgtaacaaaattaaaggacactttgcatttatcatttaat |
925694 |
T |
|
| Q |
109 |
nnnnnnnatt----------aatttattggttgtccgatacaatctaattgaaccatgattcagatatatcatcgtacaatctcctatcaagtaattaag |
198 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
925693 |
tttttttattttattttattaatttattggttgtccgattcaatctaattgaaccatgatccagatatatcatcgtacaatctcctatcaagtaattaag |
925594 |
T |
|
| Q |
199 |
atattgatttagatctatgaggtctagatgctttaaaattgaaaaagtatatgtatgtgtacgttttaaagtaacgatgctccactcatatgtatatgta |
298 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925593 |
gtattgatttagat---------------gctttaaaattgaaaaagtatatgtatgtgtacgttttaaagtaacgatgctccactcatatgtat----- |
925514 |
T |
|
| Q |
299 |
tgtaatttcnnnnnnnctttaaacagattttacatcctctaacnnnnnnncatattgtacatgacta-------atatgagatacttcgcatatacattt |
391 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
925513 |
-gtaatttctttttttctttaaacagattttacatcctctaacaaaaaaacatattgtacatgactattgactaatatgagatacttcgcatatacattt |
925415 |
T |
|
| Q |
392 |
gaacatgcgtcctaggaagatcaaatgtatacnnnnnnntggtgatgccttatccattctgtttctgctctctacaaacccaccca |
477 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925414 |
gaacatgcgtcctaggaagatcaaatgtatacaaaaaaatggtgatgccttatccattctgtttctgctctctacaaacccaccca |
925329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 925287 - 925226
Alignment:
| Q |
477 |
attcacacaaaacaacaaaatcacttcctatctatgatttttcaatatctcatgaaatctat |
538 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925287 |
attcacacaaaacaacaaaatcacttcctatctatgatttttcaatatctcatgaaatctat |
925226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 935255 - 935203
Alignment:
| Q |
9 |
agcagagatatgatcatgttcagtcttctttctactgatcttcaactatgatt |
61 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
935255 |
agcagagatatgatcatgttcagtcttctttttactgatcttcaactatgatt |
935203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 928125 - 928073
Alignment:
| Q |
9 |
agcagagatatgatcatgttcagtcttctttctactgatcttcaactatgatt |
61 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| |||||| ||||||||||| |
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| T |
928125 |
agcagagatatgatcatgtttagtgttctttctaatgatctccaactatgatt |
928073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 939044 - 938992
Alignment:
| Q |
9 |
agcagagatatgatcatgttcagtcttctttctactgatcttcaactatgatt |
61 |
Q |
| |
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|||||||||||||| || |||||| |||||||||||||||| ||||||||||| |
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| T |
939044 |
agcagagatatgattattttcagtgttctttctactgatctccaactatgatt |
938992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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