View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_185 (Length: 251)

Name: NF0809_low_185
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_185
NF0809_low_185
[»] chr3 (31 HSPs)
chr3 (1-242)||(37453052-37453293)
chr3 (59-99)||(46623903-46623943)
chr3 (59-98)||(52939650-52939689)
chr3 (59-97)||(27541537-27541575)
chr3 (59-95)||(26014812-26014848)
chr3 (60-96)||(50886397-50886433)
chr3 (54-94)||(55151746-55151786)
chr3 (62-97)||(38926626-38926661)
chr3 (59-94)||(42357115-42357150)
chr3 (59-94)||(47472330-47472365)
chr3 (52-95)||(52254166-52254209)
chr3 (67-97)||(36639099-36639129)
chr3 (63-97)||(36671053-36671087)
chr3 (43-97)||(37279295-37279349)
chr3 (63-96)||(5114077-5114110)
chr3 (52-96)||(32362932-32362977)
chr3 (52-96)||(33976421-33976466)
chr3 (52-89)||(41717589-41717626)
chr3 (59-99)||(51032658-51032699)
chr3 (59-95)||(5244229-5244265)
chr3 (59-95)||(7668222-7668258)
chr3 (68-96)||(9862532-9862560)
chr3 (69-97)||(10811133-10811161)
chr3 (59-91)||(16129526-16129558)
chr3 (59-95)||(16969601-16969637)
chr3 (59-99)||(20548025-20548065)
chr3 (68-96)||(27168726-27168754)
chr3 (68-96)||(28700471-28700499)
chr3 (59-95)||(37302546-37302582)
chr3 (66-98)||(41448218-41448250)
chr3 (59-95)||(52326019-52326055)
[»] scaffold0481 (1 HSPs)
scaffold0481 (43-95)||(1219-1271)
[»] chr2 (24 HSPs)
chr2 (59-98)||(41042251-41042290)
chr2 (59-100)||(10060457-10060498)
chr2 (59-97)||(6511249-6511287)
chr2 (43-96)||(7438567-7438621)
chr2 (59-97)||(18254244-18254282)
chr2 (59-96)||(27490765-27490802)
chr2 (59-96)||(27695981-27696018)
chr2 (59-95)||(9760017-9760053)
chr2 (60-92)||(36193760-36193792)
chr2 (59-98)||(9207587-9207626)
chr2 (59-98)||(9647141-9647180)
chr2 (59-98)||(38874650-38874689)
chr2 (59-97)||(43057062-43057101)
chr2 (52-94)||(1248687-1248729)
chr2 (43-97)||(4969551-4969605)
chr2 (59-105)||(37738000-37738046)
chr2 (59-92)||(8848730-8848763)
chr2 (59-96)||(30831755-30831792)
chr2 (52-99)||(1574592-1574640)
chr2 (59-95)||(2076569-2076605)
chr2 (63-95)||(22888860-22888892)
chr2 (59-95)||(42421933-42421969)
chr2 (68-96)||(43487378-43487406)
chr2 (59-95)||(44287475-44287511)
[»] scaffold0020 (1 HSPs)
scaffold0020 (58-96)||(165472-165510)
[»] chr7 (21 HSPs)
chr7 (59-104)||(47391349-47391395)
chr7 (59-97)||(13152591-13152629)
chr7 (43-96)||(17117173-17117226)
chr7 (59-96)||(25192919-25192956)
chr7 (59-96)||(44895607-44895644)
chr7 (59-95)||(30941386-30941422)
chr7 (53-96)||(22918470-22918513)
chr7 (68-98)||(46880899-46880929)
chr7 (59-96)||(26749016-26749053)
chr7 (59-100)||(38861091-38861132)
chr7 (59-96)||(41989765-41989802)
chr7 (59-96)||(43942648-43942685)
chr7 (59-95)||(2362664-2362700)
chr7 (68-96)||(12007230-12007258)
chr7 (52-96)||(28566080-28566123)
chr7 (52-95)||(32777734-32777778)
chr7 (68-96)||(37352109-37352137)
chr7 (59-95)||(38956651-38956687)
chr7 (52-91)||(40077394-40077434)
chr7 (59-95)||(44189345-44189381)
chr7 (68-96)||(47448825-47448853)
[»] chr5 (21 HSPs)
chr5 (52-97)||(33037518-33037563)
chr5 (59-96)||(1274357-1274394)
chr5 (59-96)||(7076424-7076461)
chr5 (59-96)||(14923082-14923119)
chr5 (52-104)||(15479459-15479512)
chr5 (59-96)||(18660758-18660795)
chr5 (59-95)||(28306167-28306203)
chr5 (52-95)||(39807742-39807785)
chr5 (59-97)||(18258828-18258866)
chr5 (59-97)||(19522038-19522076)
chr5 (66-96)||(24468328-24468358)
chr5 (66-100)||(27546321-27546355)
chr5 (66-95)||(1981890-1981919)
chr5 (66-95)||(13332332-13332361)
chr5 (68-97)||(17097846-17097875)
chr5 (59-96)||(26791279-26791316)
chr5 (68-96)||(13089826-13089854)
chr5 (60-95)||(19824122-19824158)
chr5 (63-95)||(22649700-22649732)
chr5 (52-96)||(26626707-26626751)
chr5 (59-95)||(35634871-35634907)
[»] chr4 (31 HSPs)
chr4 (58-99)||(29531639-29531680)
chr4 (59-102)||(2004223-2004267)
chr4 (43-95)||(23719572-23719624)
chr4 (59-99)||(45082977-45083017)
chr4 (59-97)||(36177904-36177942)
chr4 (59-96)||(23369367-23369404)
chr4 (59-96)||(37297048-37297085)
chr4 (59-96)||(43174983-43175020)
chr4 (59-99)||(48494935-48494976)
chr4 (59-95)||(5622458-5622494)
chr4 (59-95)||(37997256-37997292)
chr4 (59-95)||(39440484-39440520)
chr4 (59-94)||(2268542-2268577)
chr4 (59-98)||(39605976-39606015)
chr4 (66-96)||(7146162-7146192)
chr4 (59-96)||(20118780-20118818)
chr4 (59-105)||(26910193-26910238)
chr4 (68-97)||(19473988-19474017)
chr4 (68-105)||(29227287-29227324)
chr4 (63-96)||(38134352-38134385)
chr4 (68-97)||(50506391-50506420)
chr4 (59-95)||(10250550-10250586)
chr4 (59-95)||(12706163-12706199)
chr4 (68-96)||(22813754-22813782)
chr4 (59-91)||(26732229-26732261)
chr4 (52-91)||(33860438-33860478)
chr4 (53-96)||(42510812-42510856)
chr4 (68-96)||(44539735-44539763)
chr4 (59-95)||(46634100-46634136)
chr4 (59-98)||(50721779-50721819)
chr4 (68-96)||(51255745-51255773)
[»] chr1 (31 HSPs)
chr1 (52-100)||(44519179-44519227)
chr1 (59-102)||(45333563-45333606)
chr1 (59-96)||(2571634-2571671)
chr1 (54-95)||(5466364-5466405)
chr1 (59-96)||(8350231-8350268)
chr1 (59-96)||(15083085-15083122)
chr1 (59-96)||(33100807-33100844)
chr1 (59-95)||(3159376-3159412)
chr1 (59-95)||(37685331-37685367)
chr1 (59-95)||(37700151-37700187)
chr1 (59-97)||(30735328-30735366)
chr1 (59-96)||(3982066-3982103)
chr1 (68-97)||(9567005-9567034)
chr1 (52-104)||(23554890-23554943)
chr1 (43-84)||(29936756-29936797)
chr1 (66-99)||(34157516-34157549)
chr1 (59-96)||(35369699-35369736)
chr1 (43-96)||(41410950-41411003)
chr1 (68-97)||(45121537-45121566)
chr1 (68-96)||(4213071-4213099)
chr1 (69-97)||(16250312-16250340)
chr1 (68-104)||(22674703-22674739)
chr1 (59-95)||(23645411-23645447)
chr1 (59-98)||(25989018-25989058)
chr1 (59-95)||(27465092-27465128)
chr1 (52-95)||(33076119-33076163)
chr1 (43-91)||(35414608-35414656)
chr1 (59-95)||(37275068-37275104)
chr1 (43-98)||(43893254-43893310)
chr1 (68-96)||(48983712-48983740)
chr1 (52-95)||(51168656-51168700)
[»] chr6 (10 HSPs)
chr6 (59-96)||(1156720-1156757)
chr6 (59-96)||(22079598-22079635)
chr6 (59-95)||(8098630-8098666)
chr6 (59-95)||(25811873-25811909)
chr6 (59-95)||(34047387-34047423)
chr6 (59-98)||(20712064-20712103)
chr6 (59-97)||(32316963-32317001)
chr6 (60-97)||(552791-552828)
chr6 (68-96)||(17551423-17551451)
chr6 (59-95)||(18737590-18737626)
[»] scaffold0098 (1 HSPs)
scaffold0098 (52-96)||(49294-49338)
[»] scaffold0003 (1 HSPs)
scaffold0003 (59-95)||(366294-366330)
[»] chr8 (19 HSPs)
chr8 (59-95)||(22719440-22719476)
chr8 (59-95)||(27325758-27325794)
chr8 (59-95)||(31249559-31249595)
chr8 (59-95)||(43397781-43397817)
chr8 (60-95)||(4054322-4054357)
chr8 (61-96)||(34810678-34810713)
chr8 (69-99)||(16487606-16487636)
chr8 (59-96)||(33100503-33100541)
chr8 (52-105)||(33107894-33107948)
chr8 (68-97)||(5849610-5849639)
chr8 (59-96)||(24479235-24479272)
chr8 (59-96)||(37449460-37449497)
chr8 (66-95)||(42733607-42733636)
chr8 (68-96)||(5772016-5772044)
chr8 (59-95)||(7271852-7271888)
chr8 (59-102)||(9048350-9048394)
chr8 (59-94)||(10839516-10839552)
chr8 (68-96)||(28772168-28772196)
chr8 (59-95)||(32501231-32501267)
[»] scaffold0067 (1 HSPs)
scaffold0067 (59-94)||(35524-35559)
[»] scaffold0257 (1 HSPs)
scaffold0257 (69-102)||(23974-24007)
[»] scaffold0115 (1 HSPs)
scaffold0115 (58-105)||(15221-15269)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37453293 - 37453052
Alignment:
Q  1 aaactagacaaataggttgttcccatatctaaacttcgaagtagagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37453293 aaactagacaaataggttgttcccatatctaaacttcgaagtagagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatat 37453194  T
Q  101 ttaaactttgaaattcaagcaaaacaagttgtccacgtatgcagttaatttttatttttatttgtgtaatgactaaagatgtttgcttctttatgagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37453193 ttaaactttgaaattcaagcaaaacaagttgtccacgtatgcagttaatttttatttttatttgtgtaatgactaaatatgtttgcttctttatgagttg 37453094  T
Q  201 ctggtggttcagtcagttatttagctgacagcatagtataat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37453093 ctggtggttcagtcagttatttagctgacagcatagtataat 37453052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 46623943 - 46623903
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctata 99  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  46623943 aaagttgtaaaaaatggttgttcaaatatcatttctctata 46623903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 52939689 - 52939650
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  52939689 aaagttgtaaaaaatggttgttcaaatatcatttctctat 52939650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 27541537 - 27541575
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27541537 aaagttgtaaaaaatggttgttcaaatatcatttctcta 27541575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 26014848 - 26014812
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26014848 aaagttgtaaaaaatggttgttcaaatatcatttctc 26014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 50886433 - 50886397
Alignment:
Q  60 aagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    ||||||||||||||| |||||||||||||||||||||    
T  50886433 aagttgttaaaaatgattgttcaaatatcatttctct 50886397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 55151746 - 55151786
Alignment:
Q  54 tcatcaaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  55151746 tcataaaagttgtcaaaaatggttgttcaaatatcatttct 55151786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 38926661 - 38926626
Alignment:
Q  62 gttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38926661 gttgtaaaaaatggttgttcaaatatcatttctcta 38926626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 42357115 - 42357150
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    |||||||| |||||||||||||||||||||||||||    
T  42357115 aaagttgtaaaaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 47472365 - 47472330
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    |||||||| |||||||||||||||||||||||||||    
T  47472365 aaagttgtaaaaaatggttgttcaaatatcatttct 47472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 52254166 - 52254209
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||| |||||||| || |||||||||||||||||||||||||    
T  52254166 tgtcataaaagttgtaaacaatggttgttcaaatatcatttctc 52254209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 36639129 - 36639099
Alignment:
Q  67 taaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||||||||||||||||||||||||||    
T  36639129 taaaaatggttgttcaaatatcatttctcta 36639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 36671053 - 36671087
Alignment:
Q  63 ttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||| ||||||||||||||||||||||||||||||    
T  36671053 ttgtaaaaaatggttgttcaaatatcatttctcta 36671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 37279295 - 37279349
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| | ||||||||||||||||||||| ||||  |||||||||| |||||    
T  37279295 agagagaattatcatcaaagttgttaaaaatgattgtcaaaatatcattcctcta 37279349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 5114110 - 5114077
Alignment:
Q  63 ttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||| |||||||||||||||||||||||||||||    
T  5114110 ttgtaaaaaatggttgttcaaatatcatttctct 5114077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 32362977 - 32362932
Alignment:
Q  52 tgtcatcaaagttgttaaaaa-tggttgttcaaatatcatttctct 96  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  32362977 tgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 33976421 - 33976466
Alignment:
Q  52 tgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctct 96  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||    
T  33976421 tgtcataaaagttgttacaaaatggatgttcaaatatcatttctct 33976466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 41717589 - 41717626
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatca 89  Q
    |||||| | |||||||||||||||||||||||||||||    
T  41717589 tgtcatgatagttgttaaaaatggttgttcaaatatca 41717626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 51032658 - 51032699
Alignment:
Q  59 aaagttgtta-aaaatggttgttcaaatatcatttctctata 99  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  51032658 aaagttgttagaaaatggttgtacaaatatcatttctctata 51032699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 5244265 - 5244229
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  5244265 aaagttgtaaaatatggttgttcaaatatcatttctc 5244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 7668222 - 7668258
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  7668222 aaagttgtaaaaaatgattgttcaaatatcatttctc 7668258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 9862560 - 9862532
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  9862560 aaaaatggttgttcaaatatcatttctct 9862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 10811161 - 10811133
Alignment:
Q  69 aaaatggttgttcaaatatcatttctcta 97  Q
    |||||||||||||||||||||||||||||    
T  10811161 aaaatggttgttcaaatatcatttctcta 10811133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 16129558 - 16129526
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatt 91  Q
    |||||||| ||||||||||||||||||||||||    
T  16129558 aaagttgtaaaaaatggttgttcaaatatcatt 16129526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 16969601 - 16969637
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  16969601 aaagttgtcaaaaatggttgttaaaatatcatttctc 16969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 20548025 - 20548065
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctata 99  Q
    |||||||| |||| || ||||||||||||||||||||||||    
T  20548025 aaagttgtaaaaactgattgttcaaatatcatttctctata 20548065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 27168726 - 27168754
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  27168726 aaaaatggttgttcaaatatcatttctct 27168754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 28700499 - 28700471
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  28700499 aaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 37302582 - 37302546
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  37302582 aaagttgtaaaaaatggttgttaaaatatcatttctc 37302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 41448218 - 41448250
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||||||||| ||||||||||||||||||    
T  41448218 ttaaaaatggttgtacaaatatcatttctctat 41448250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 52326055 - 52326019
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||||||| |||||||||||||||||    
T  52326055 aaagttgtaaaaaatggttattcaaatatcatttctc 52326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 1219 - 1271
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  1219 agagagaattgtcatcaaagttgttaaaagtggttgtttaaatatcatttctc 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 41042290 - 41042251
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41042290 aaagttgttaaaaatggttgttcaaatatcatttctctat 41042251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 10060457 - 10060498
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctatat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  10060457 aaagttgttaaaaatggttgttcaaatatcattgctctatat 10060498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 6511287 - 6511249
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  6511287 aaagttgtaaaaaatggttgttcaaatatcatttctcta 6511249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 7438621 - 7438567
Alignment:
Q  43 agagagaactgtcatcaaagttgtt-aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||  |||||| ||||||||| |||||||||||||||||||||||||||||    
T  7438621 agagagagttgtcataaaagttgtttaaaaatggttgttcaaatatcatttctct 7438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 18254244 - 18254282
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18254244 aaagttgtaaaaaatggttgttcaaatatcatttctcta 18254282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 27490765 - 27490802
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27490765 aaagttgtcaaaaatggttgttcaaatatcatttctct 27490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 27695981 - 27696018
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27695981 aaagttgtcaaaaatggttgttcaaatatcatttctct 27696018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 9760053 - 9760017
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9760053 aaagttgtaaaaaatggttgttcaaatatcatttctc 9760017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 36193760 - 36193792
Alignment:
Q  60 aagttgttaaaaatggttgttcaaatatcattt 92  Q
    |||||||||||||||||||||||||||||||||    
T  36193760 aagttgttaaaaatggttgttcaaatatcattt 36193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 9207626 - 9207587
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  9207626 aaagttgtaaaaaatgattgttcaaatatcatttctctat 9207587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 9647180 - 9647141
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  9647180 aaagttgtaaaaaatagttgttcaaatatcatttctctat 9647141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 38874650 - 38874689
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  38874650 aaagttattaaaaatggttgtttaaatatcatttctctat 38874689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 43057101 - 43057062
Alignment:
Q  59 aaagttgttaaaaa-tggttgttcaaatatcatttctcta 97  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  43057101 aaagttgttaaaaagtggttgttcaaatatcatttctcta 43057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 1248729 - 1248687
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    |||||| |||||||| |||||||||||||||||||| ||||||    
T  1248729 tgtcataaaagttgtaaaaaatggttgttcaaatattatttct 1248687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 4969551 - 4969605
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||  ||||| ||||||||||||||||||||||  |||||||||| |||||    
T  4969551 agagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcattcctcta 4969605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 37738000 - 37738046
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctatatttaaa 105  Q
    ||||||||  ||||||||||||||||||||||||||| | |||||||    
T  37738000 aaagttgtcgaaaatggttgttcaaatatcatttctcaaaatttaaa 37738046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 8848730 - 8848763
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcattt 92  Q
    |||||||| |||||||||||||||||||||||||    
T  8848730 aaagttgtcaaaaatggttgttcaaatatcattt 8848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 30831792 - 30831755
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  30831792 aaagttgtcaaaaatggttgttcaaatataatttctct 30831755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 1574592 - 1574640
Alignment:
Q  52 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctctata 99  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||||    
T  1574592 tgtcattaaagttgttagcaaatggttgttcaaatatcattgctctata 1574640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 2076605 - 2076569
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  2076605 aaagttgtaaaaaatggttgttcaaatatcgtttctc 2076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 22888860 - 22888892
Alignment:
Q  63 ttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||| ||||||||||||||||||||||||||||    
T  22888860 ttgtcaaaaatggttgttcaaatatcatttctc 22888892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 42421933 - 42421969
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42421933 aaagttgtaaaaaatggttgttcgaatatcatttctc 42421969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 43487406 - 43487378
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  43487406 aaaaatggttgttcaaatatcatttctct 43487378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 44287475 - 44287511
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||| |||||||||||||||||||||    
T  44287475 aaagttgtaaaaaatagttgttcaaatatcatttctc 44287511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 165510 - 165472
Alignment:
Q  58 caaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||||||||||||    
T  165510 caaagttgttaaaaatggttgttcaaatatcatttctct 165472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 47391349 - 47391395
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttct-ctatatttaa 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  47391349 aaagttgttaaaaatggttgttcaaatatcatttctcctatatttaa 47391395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 13152629 - 13152591
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  13152629 aaagttgtcaaaaatggttgttcaaatatcatttctcta 13152591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 17117173 - 17117226
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||  ||||| ||||||||||||||| ||||||||||||| |||||||||    
T  17117173 agagagagttgtcaccaaagttgttaaaaagggttgttcaaataacatttctct 17117226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 25192919 - 25192956
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25192919 aaagttgtaaaaaatggttgttcaaatatcatttctct 25192956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 44895607 - 44895644
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44895607 aaagttgtaaaaaatggttgttcaaatatcatttctct 44895644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 30941422 - 30941386
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30941422 aaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 22918470 - 22918513
Alignment:
Q  53 gtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||    
T  22918470 gtcataaaaattgtaaaaaatggttgttcaaatatcatttctct 22918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 46880929 - 46880899
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||||||||||||||||||||||||||    
T  46880929 aaaaatggttgttcaaatatcatttctctat 46880899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 26749053 - 26749016
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  26749053 aaagttgtcaaaaattgttgttcaaatatcatttctct 26749016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 38861132 - 38861091
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctatat 100  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  38861132 aaagttgtaaaaaatgattgttcaaatatcatttctcaatat 38861091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 41989765 - 41989802
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  41989765 aaagttgtaaaaaatggttgttaaaatatcatttctct 41989802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 43942685 - 43942648
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  43942685 aaagttgtaaaaaatagttgttcaaatatcatttctct 43942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 2362700 - 2362664
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  2362700 aaagttgtaaaaaatggttgttcatatatcatttctc 2362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 12007230 - 12007258
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  12007230 aaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 28566080 - 28566123
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||    
T  28566080 tgtcatcaaa-ttgttaaaaatagttattcaaatatcatttctct 28566123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 32777734 - 32777778
Alignment:
Q  52 tgtcatcaaagttgttaaaa-atggttgttcaaatatcatttctc 95  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||    
T  32777734 tgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctc 32777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 37352137 - 37352109
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  37352137 aaaaatggttgttcaaatatcatttctct 37352109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 38956651 - 38956687
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  38956651 aaagttgtaaaaaatggttgtttaaatatcatttctc 38956687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 40077394 - 40077434
Alignment:
Q  52 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatt 91  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  40077394 tgtcataaaagttgttaacaaatggttgttcaaatatcatt 40077434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 44189345 - 44189381
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||| | ||||||||||||||||||||||||||||    
T  44189345 aaagttataaaaaatggttgttcaaatatcatttctc 44189381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 47448853 - 47448825
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  47448853 aaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 33037563 - 33037518
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  33037563 tgtcataaaagttgtaaaaaatggttgttcaaatatcatttctcta 33037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 1274394 - 1274357
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1274394 aaagttgtcaaaaatggttgttcaaatatcatttctct 1274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 7076461 - 7076424
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7076461 aaagttgtaaaaaatggttgttcaaatatcatttctct 7076424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 14923119 - 14923082
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14923119 aaagttgtaaaaaatggttgttcaaatatcatttctct 14923082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 15479512 - 15479459
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc-tatatttaa 104  Q
    |||||| |||||||| ||||||| |||||||||||||||||||| |||||||||    
T  15479512 tgtcataaaagttgtaaaaaatgattgttcaaatatcatttctcatatatttaa 15479459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 18660795 - 18660758
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  18660795 aaagttgtcaaaaatggttgttcaaatatcatttctct 18660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 28306167 - 28306203
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28306167 aaagttgtaaaaaatggttgttcaaatatcatttctc 28306203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 39807742 - 39807785
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||    
T  39807742 tgtcataaaaattgtaaaaaatggttgttcaaatatcatttctc 39807785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 18258828 - 18258866
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  18258828 aaagttataaaaaatggttgttcaaatatcatttctcta 18258866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 19522038 - 19522076
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  19522038 aaagttgtaaaaaatggttgttcaaatatcatttttcta 19522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 24468328 - 24468358
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||||    
T  24468328 ttaaaaatggttgttcaaatatcatttctct 24468358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 27546355 - 27546321
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctctatat 100  Q
    ||||||||||||||||||| |||||||||||||||    
T  27546355 ttaaaaatggttgttcaaacatcatttctctatat 27546321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 1981919 - 1981890
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||||||||||||||||||||||||    
T  1981919 ttaaaaatggttgttcaaatatcatttctc 1981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 13332361 - 13332332
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||||||||||||||||||||||||    
T  13332361 ttaaaaatggttgttcaaatatcatttctc 13332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 17097846 - 17097875
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  17097846 aaaaatggttgttcaaatatcatttctcta 17097875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 26791279 - 26791316
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  26791279 aaagttgtaaaaaatggttgttcaaatattatttctct 26791316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 13089826 - 13089854
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  13089826 aaaaatggttgttcaaatatcatttctct 13089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 19824158 - 19824122
Alignment:
Q  60 aagttgttaa-aaatggttgttcaaatatcatttctc 95  Q
    |||||||||| ||||||||||||||||||||||||||    
T  19824158 aagttgttaacaaatggttgttcaaatatcatttctc 19824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 22649700 - 22649732
Alignment:
Q  63 ttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||| ||||||||||||||||||||||||||||    
T  22649700 ttgtaaaaaatggttgttcaaatatcatttctc 22649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 26626751 - 26626707
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||    
T  26626751 tgtcatgaaagttgtaacaaatggttgttcaaatatcattgctct 26626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 35634871 - 35634907
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  35634871 aaagttgtcaaaaatgattgttcaaatatcatttctc 35634907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 29531639 - 29531680
Alignment:
Q  58 caaagttgttaaaaatggttgttcaaatatcatttctctata 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29531639 caaagttgtaaaaaatggttgttcaaatatcatttctctata 29531680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 2004223 - 2004267
Alignment:
Q  59 aaagttgttaaaa-atggttgttcaaatatcatttctctatattt 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  2004223 aaagttgttaaaaaatggttgttcaaatatcatttctctatattt 2004267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 23719572 - 23719624
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  23719572 agagagagttgtcatcaaaattgttaaaaatggttgtttaaatatcatttctc 23719624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 45083017 - 45082977
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctata 99  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  45083017 aaagttgtcaaaaatggttgttcaaatatcatttctctata 45082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 36177942 - 36177904
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  36177942 aaagttgtaaaaaatggttgttcaaatatcatttctcta 36177904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 23369367 - 23369404
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23369367 aaagttgtaaaaaatggttgttcaaatatcatttctct 23369404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 37297085 - 37297048
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37297085 aaagttgtaaaaaatggttgttcaaatatcatttctct 37297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 43175020 - 43174983
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  43175020 aaagttgtaaaaaatggttgttcaaatatcatttctct 43174983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 48494935 - 48494976
Alignment:
Q  59 aaagttgttaaaaa-tggttgttcaaatatcatttctctata 99  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  48494935 aaagttgttaaaaagtggttgttcaaatatcatttctctata 48494976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 5622494 - 5622458
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5622494 aaagttgtaaaaaatggttgttcaaatatcatttctc 5622458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 37997292 - 37997256
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37997292 aaagttgtaaaaaatggttgttcaaatatcatttctc 37997256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 39440520 - 39440484
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39440520 aaagttgtaaaaaatggttgttcaaatatcatttctc 39440484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 2268542 - 2268577
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2268542 aaagttgttaaaaatggatgttcaaatatcatttct 2268577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 39606015 - 39605976
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  39606015 aaagttgtcaaaaatggttgttcatatatcatttctctat 39605976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 7146162 - 7146192
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||||    
T  7146162 ttaaaaatggttgttcaaatatcatttctct 7146192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 20118818 - 20118780
Alignment:
Q  59 aaagttgtta-aaaatggttgttcaaatatcatttctct 96  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  20118818 aaagttgttataaaatggttgttcaaatatcatttctct 20118780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 26910238 - 26910193
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctatatttaaa 105  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  26910238 aaagttgtaaaaaatggtt-ttcaaatatcatttctctataattaaa 26910193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 19473988 - 19474017
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  19473988 aaaaatggttgttcaaatatcatttctcta 19474017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 29227287 - 29227324
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctctatatttaaa 105  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  29227287 aaaagtggttgttcaaatatcatttctctatagttaaa 29227324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 38134385 - 38134352
Alignment:
Q  63 ttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||| |||||||||||||||||||||||||||||    
T  38134385 ttgtaaaaaatggttgttcaaatatcatttctct 38134352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 50506420 - 50506391
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  50506420 aaaaatggttgttcaaatatcatttctcta 50506391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 10250550 - 10250586
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||| |||||||||||||||||||||    
T  10250550 aaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 12706199 - 12706163
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  12706199 aaagttgttgaaaatggatgttcaaatatcatttctc 12706163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 22813754 - 22813782
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  22813754 aaaaatggttgttcaaatatcatttctct 22813782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 26732261 - 26732229
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatt 91  Q
    |||||||| ||||||||||||||||||||||||    
T  26732261 aaagttgtgaaaaatggttgttcaaatatcatt 26732229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 33860478 - 33860438
Alignment:
Q  52 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatt 91  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  33860478 tgtcatcaaagttgttagcaaatggttgttcaaatatcatt 33860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 42510856 - 42510812
Alignment:
Q  53 gtcatcaaagttgttaa-aaatggttgttcaaatatcatttctct 96  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||    
T  42510856 gtcatcaaagttgttagcaaatggttgttcaaatatcattgctct 42510812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 44539763 - 44539735
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  44539763 aaaaatggttgttcaaatatcatttctct 44539735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 46634136 - 46634100
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  46634136 aaagttgtaaaaaatgattgttcaaatatcatttctc 46634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 50721779 - 50721819
Alignment:
Q  59 aaagttgttaaaaat-ggttgttcaaatatcatttctctat 98  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  50721779 aaagttgtcaaaaattggttgttcaaatatcatttctctat 50721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 51255773 - 51255745
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  51255773 aaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 44519179 - 44519227
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatat 100  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  44519179 tgtcataaaagttgtcaaaaatggttgttcatatatcatttctctatat 44519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 45333606 - 45333563
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctatattt 102  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  45333606 aaagttgtaaaaaatgattgttcaaatatcatttctctatattt 45333563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 2571671 - 2571634
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2571671 aaagttgtaaaaaatggttgttcaaatatcatttctct 2571634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 5466364 - 5466405
Alignment:
Q  54 tcatcaaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  5466364 tcatcaaagttgttaaaaatgattgtttaaatatcatttctc 5466405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 8350231 - 8350268
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8350231 aaagttgtaaaaaatggttgttcaaatatcatttctct 8350268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 15083085 - 15083122
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  15083085 aaagttgtcaaaaatggttgttcaaatatcatttctct 15083122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 33100844 - 33100807
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33100844 aaagttgtaaaaaatggttgttcaaatatcatttctct 33100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 3159412 - 3159376
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3159412 aaagttgtaaaaaatggttgttcaaatatcatttctc 3159376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 37685367 - 37685331
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37685367 aaagttgtaaaaaatggttgttcaaatatcatttctc 37685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 37700151 - 37700187
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37700151 aaagttgtaaaaaatggttgttcaaatatcatttctc 37700187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 30735328 - 30735366
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  30735328 aaagttgtaaaaaatggttgttcaaatatcatttatcta 30735366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 3982066 - 3982103
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  3982066 aaagttgtaaaaaaaggttgttcaaatatcatttctct 3982103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 9567005 - 9567034
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  9567005 aaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 23554890 - 23554943
Alignment:
Q  52 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctctatatttaa 104  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||| |||||    
T  23554890 tgtcatgaaagttgttagcaaatggttgttcaaatatcattgctctatttttaa 23554943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 29936797 - 29936756
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaa 84  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  29936797 agagagagttgtcaccaaagttgttaaaaatggttgttcaaa 29936756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 34157549 - 34157516
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctctata 99  Q
    |||||||||||||| |||||||||||||||||||    
T  34157549 ttaaaaatggttgtacaaatatcatttctctata 34157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 35369736 - 35369699
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  35369736 aaagttgtaaaaaatgattgttcaaatatcatttctct 35369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 41411003 - 41410950
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| ||||| |||| |||||||||||||||||  |||||||||| ||||    
T  41411003 agagagaattgtcaccaaaattgttaaaaatggttgtcaaaatatcattcctct 41410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 45121537 - 45121566
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  45121537 aaaaatggttgttcaaatatcatttctcta 45121566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 4213099 - 4213071
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  4213099 aaaaatggttgttcaaatatcatttctct 4213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 16250340 - 16250312
Alignment:
Q  69 aaaatggttgttcaaatatcatttctcta 97  Q
    |||||||||||||||||||||||||||||    
T  16250340 aaaatggttgttcaaatatcatttctcta 16250312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 22674739 - 22674703
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctctatatttaa 104  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  22674739 aaaaatagttgtacaaatatcatttctctatatttaa 22674703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 23645447 - 23645411
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| |||||||||||| |||||||||||||||    
T  23645447 aaagttgtaaaaaatggttgtccaaatatcatttctc 23645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 25989018 - 25989058
Alignment:
Q  59 aaagttgttaaaa-atggttgttcaaatatcatttctctat 98  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  25989018 aaagttgttaaaaaatggttgtacaaatatcatttctctat 25989058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 27465092 - 27465128
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  27465092 aaagttgtaaaaaatggttgtttaaatatcatttctc 27465128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 33076163 - 33076119
Alignment:
Q  52 tgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctc 95  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||    
T  33076163 tgtcataaaagttgttagaaaatggttgtacaaatatcatttctc 33076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 35414608 - 35414656
Alignment:
Q  43 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatt 91  Q
    |||||||  ||||| ||||||||||||||||||||||  ||||||||||    
T  35414608 agagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcatt 35414656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 37275068 - 37275104
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||| | ||||||||||||||||||||||||||||    
T  37275068 aaagttataaaaaatggttgttcaaatatcatttctc 37275104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 43893310 - 43893254
Alignment:
Q  43 agagagaactgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctctat 98  Q
    ||||| || |||||| |||||||| | ||||||| ||||||||||||||||||||||    
T  43893310 agagaaaattgtcataaaagttgtgacaaaatggatgttcaaatatcatttctctat 43893254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 48983712 - 48983740
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  48983712 aaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 51168700 - 51168656
Alignment:
Q  52 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctc 95  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  51168700 tgtcataaaagttgttagcaaatggttgttcaaatatcatttctc 51168656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 1156757 - 1156720
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1156757 aaagttgtaaaaaatggttgttcaaatatcatttctct 1156720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 22079598 - 22079635
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22079598 aaagttgtaaaaaatggttgttcaaatatcatttctct 22079635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 8098630 - 8098666
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8098630 aaagttgtaaaaaatggttgttcaaatatcatttctc 8098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 25811873 - 25811909
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25811873 aaagttgtaaaaaatggttgttcaaatatcatttctc 25811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 34047423 - 34047387
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34047423 aaagttgtaaaaaatggttgttcaaatatcatttctc 34047387  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 20712103 - 20712064
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctctat 98  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  20712103 aaagttgttaaaaatagttgtacaaatatcatttctctat 20712064  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 32316963 - 32317001
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  32316963 aaagttgtaaaaaatagttgttcaaatatcatttctcta 32317001  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 552828 - 552791
Alignment:
Q  60 aagttgttaaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  552828 aagttgtaaaaaatgtttgttcaaatatcatttctcta 552791  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 17551423 - 17551451
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  17551423 aaaaatggttgttcaaatatcatttctct 17551451  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 18737590 - 18737626
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18737590 aaagttataaaaaatggttgttcaaatatcatttctc 18737626  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 49338 - 49294
Alignment:
Q  52 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||| |||||| | |||||||||||||||||||||||||||||    
T  49338 tgtcataaaagttataaaaaatggttgttcaaatatcatttctct 49294  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 366330 - 366294
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||||||||||||||| |||||||||||||||    
T  366330 aaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 22719476 - 22719440
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  22719476 aaagttgtaaaaaatggttgttcaaatatcatttctc 22719440  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 27325794 - 27325758
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  27325794 aaagttgtaaaaaatggttgttcaaatatcatttctc 27325758  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 31249559 - 31249595
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31249559 aaagttgtaaaaaatggttgttcaaatatcatttctc 31249595  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 43397817 - 43397781
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||||||||||||||||||||||||    
T  43397817 aaagttgtaaaaaatggttgttcaaatatcatttctc 43397781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 95
Target Start/End: Original strand, 4054322 - 4054357
Alignment:
Q  60 aagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4054322 aagttgtaaaaaatggttgttcaaatatcatttctc 4054357  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 34810678 - 34810713
Alignment:
Q  61 agttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||| |||||||||||||||||||||||||||||    
T  34810678 agttgtaaaaaatggttgttcaaatatcatttctct 34810713  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 16487636 - 16487606
Alignment:
Q  69 aaaatggttgttcaaatatcatttctctata 99  Q
    |||||||||||||||||||||||||||||||    
T  16487636 aaaatggttgttcaaatatcatttctctata 16487606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 33100503 - 33100541
Alignment:
Q  59 aaagttgtta-aaaatggttgttcaaatatcatttctct 96  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33100503 aaagttgttataaaatggttgttcaaatatcatttctct 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 33107894 - 33107948
Alignment:
Q  52 tgtcatcaaagttgttaaaaa-tggttgttcaaatatcatttctctatatttaaa 105  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||| || |||||    
T  33107894 tgtcataaaagttgtcaaaaagtggttgttcaaatatcatttctctttaattaaa 33107948  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 5849610 - 5849639
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctcta 97  Q
    ||||||||||||||||||||||||||||||    
T  5849610 aaaaatggttgttcaaatatcatttctcta 5849639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 24479272 - 24479235
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||| | |||||||||||||||||||||||||||||    
T  24479272 aaagttatcaaaaatggttgttcaaatatcatttctct 24479235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 37449460 - 37449497
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctct 96  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  37449460 aaagttgtaaaaaatggttgttgaaatatcatttctct 37449497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 42733607 - 42733636
Alignment:
Q  66 ttaaaaatggttgttcaaatatcatttctc 95  Q
    ||||||||||||||||||||||||||||||    
T  42733607 ttaaaaatggttgttcaaatatcatttctc 42733636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 5772016 - 5772044
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  5772016 aaaaatggttgttcaaatatcatttctct 5772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7271888 - 7271852
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||||||||||  ||||||||||||||||||||    
T  7271888 aaagttgttaaaaattattgttcaaatatcatttctc 7271852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 9048350 - 9048394
Alignment:
Q  59 aaagttgtta-aaaatggttgttcaaatatcatttctctatattt 102  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||    
T  9048350 aaagttgttagaaaatggttatacaaatatcatttctctatattt 9048394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 10839516 - 10839552
Alignment:
Q  59 aaagttgttaaaaat-ggttgttcaaatatcatttct 94  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10839516 aaagttgttaaaaattggttgttcaaatatcatttct 10839552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 28772168 - 28772196
Alignment:
Q  68 aaaaatggttgttcaaatatcatttctct 96  Q
    |||||||||||||||||||||||||||||    
T  28772168 aaaaatggttgttcaaatatcatttctct 28772196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 32501231 - 32501267
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttctc 95  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  32501231 aaagttgtaaaaaatgattgttcaaatatcatttctc 32501267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 35559 - 35524
Alignment:
Q  59 aaagttgttaaaaatggttgttcaaatatcatttct 94  Q
    |||||||| |||||||||||||||||||||||||||    
T  35559 aaagttgtaaaaaatggttgttcaaatatcatttct 35524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 24007 - 23974
Alignment:
Q  69 aaaatggttgttcaaatatcatttctctatattt 102  Q
    |||||||||||||||||||||||||||| |||||    
T  24007 aaaatggttgttcaaatatcatttctctttattt 23974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 15221 - 15269
Alignment:
Q  58 caaagttgttaaaaa-tggttgttcaaatatcatttctctatatttaaa 105  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||||||    
T  15221 caaagttgttaaaaagtgattgtacaaatatcatttctctaaatttaaa 15269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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