View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_187 (Length: 250)
Name: NF0809_low_187
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_187 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5421948 - 5422177
Alignment:
| Q |
1 |
acatatgcgccaatgtttgagatgaggaaaagaaataagtaaccaattctaaatttatattcataagccattaaataaatga--------aaaaaggaac |
92 |
Q |
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| T |
5421948 |
acatatgcgccaatgtttgagatgaggaaaagaaataagtaacaaattctaaatttatattcataagccattaaataaatgataaggaagaaaaaggaac |
5422047 |
T |
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| Q |
93 |
tcaaatacatcttgtactctttcatgtaaatgagaaggaagactatgtttttatcttctacaactctacttatcctattacacttttggaaatcaaatac |
192 |
Q |
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| T |
5422048 |
tcaaatacatcttgtactctttcatgtaaatgagaaggaagactatgtttttatcttctacaactctacttatcctattacacttttggaaatcaaatac |
5422147 |
T |
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| Q |
193 |
aataaaattggacttggaataagagatttg |
222 |
Q |
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| T |
5422148 |
aacaaaattggacttggaataagagatttg |
5422177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 6952350 - 6952410
Alignment:
| Q |
10 |
ccaatgtttgagatgaggaaaagaaataagtaaccaattctaaatttatattcataagccat |
71 |
Q |
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| T |
6952350 |
ccaatatttgagatgaggaaa-gaaataagtaaccacttataaatttctattcataaaccat |
6952410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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