View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_19 (Length: 626)

Name: NF0809_low_19
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_19
NF0809_low_19
[»] chr4 (9 HSPs)
chr4 (91-626)||(43922628-43923163)
chr4 (91-469)||(48848675-48849053)
chr4 (530-626)||(48846439-48846535)
chr4 (466-545)||(48846547-48846626)
chr4 (247-375)||(24132668-24132796)
chr4 (288-384)||(7587093-7587189)
chr4 (253-366)||(24302257-24302370)
chr4 (514-605)||(46785017-46785108)
chr4 (311-375)||(3882314-3882378)
[»] chr5 (7 HSPs)
chr5 (91-453)||(31728814-31729176)
chr5 (272-360)||(6640464-6640552)
chr5 (312-375)||(32873949-32874012)
chr5 (254-372)||(31845333-31845451)
chr5 (521-612)||(23944525-23944616)
chr5 (344-469)||(28282002-28282127)
chr5 (260-388)||(11586407-11586535)
[»] chr7 (2 HSPs)
chr7 (92-469)||(1578430-1578807)
chr7 (475-626)||(1579665-1579816)
[»] chr8 (3 HSPs)
chr8 (288-396)||(26708169-26708277)
chr8 (311-366)||(41655715-41655770)
chr8 (527-612)||(23133137-23133222)
[»] scaffold0214 (1 HSPs)
scaffold0214 (512-626)||(8460-8574)
[»] chr2 (4 HSPs)
chr2 (511-621)||(26790819-26790929)
chr2 (506-605)||(16321963-16322062)
chr2 (308-366)||(5542085-5542143)
chr2 (308-360)||(3778532-3778584)
[»] scaffold0156 (1 HSPs)
scaffold0156 (231-363)||(17522-17654)
[»] chr1 (6 HSPs)
chr1 (260-363)||(14937691-14937795)
chr1 (527-612)||(20284359-20284444)
chr1 (299-363)||(23465960-23466024)
chr1 (299-411)||(44274199-44274311)
chr1 (291-387)||(50236033-50236129)
chr1 (311-375)||(50452494-50452558)
[»] chr3 (6 HSPs)
chr3 (236-366)||(53240761-53240891)
chr3 (527-612)||(11896658-11896743)
chr3 (307-399)||(38646665-38646757)
chr3 (521-602)||(17718907-17718988)
chr3 (521-602)||(19020136-19020217)
chr3 (308-360)||(26432179-26432231)
[»] chr6 (3 HSPs)
chr6 (286-372)||(27849624-27849710)
chr6 (299-375)||(24990140-24990216)
chr6 (232-375)||(12645389-12645532)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 91 - 626
Target Start/End: Complemental strand, 43923163 - 43922628
Alignment:
Q  91 caagtgtggggctgctgaatatttgtgagtaagaaattggacccatagcttggtggagtgctgaaccatgtcccaaaccaatgtaccaaggagacaaata 190  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43923163 caagtgtggggctgctgaatatttgtgtgtaagaaattggacccatagcttggtggagtgctgaaccatgtcccaaaccaatttaccaaggagacaaata 43923064  T
Q  191 ttcattcttctagatgagcggatacccaagcctcccatgatttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43923063 ttcattcttctagatgagcggatacccaagcctcccatgatttttggcttagctattttatcccaaccaaccaaatgaatgcctttgttgttagaatctc 43922964  T
Q  291 tccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacaga 390  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43922963 tccatatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacaga 43922864  T
Q  391 agaagctaaggctaatctacccagttttttgagaagcttgttcttcctagaggctaatctagtttgcattttctcaatggatgagtcaaaatggctggtg 490  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43922863 agaagctaaggctaatctacccggtttgttgagaagcttgttcttcctagaggctaatctagtttgcattttctcaatggatgggtcaaaatggctggtg 43922764  T
Q  491 tggaaggctgagtgaacaaggttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgt 590  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  43922763 tggaaggccgggtgaacaaggttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaacccatccggaccagaggctttgt 43922664  T
Q  591 agggtttcatggagtgaagggcggctgtcacttctt 626  Q
    ||| ||||||||||||||||||||||||||||||||    
T  43922663 aggatttcatggagtgaagggcggctgtcacttctt 43922628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 91 - 469
Target Start/End: Complemental strand, 48849053 - 48848675
Alignment:
Q  91 caagtgtggggctgctgaatatttgtgagtaagaaattggacccatagcttggtggagtgctgaaccatgtcccaaaccaatgtaccaaggagacaaata 190  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||    
T  48849053 caagtgcggggctgctgaatatttgtgagtgagaagttggacccatagcttggtggagtgctgaacaatgtcccaaatcaatttaccaaggagacatata 48848954  T
Q  191 ttcattcttctagatgagcggatacccaagcctcccatgatttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  48848953 ttcattcttctagatgagcggatacccaagcctcccatgatttttggtttagctattttatcccaaccaaccaaatgaatgcctttgttattagaatctc 48848854  T
Q  291 tccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacaga 390  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||    
T  48848853 tccagatgaaattacgtgttgtttgatcaatgctatcatagatgctttgggggagccaattaatctgcatgtaatacaaagggatagatgataacacgga 48848754  T
Q  391 agaagctaaggctaatctacccagttttttgagaagcttgttcttcctagaggctaatctagtttgcattttctcaatg 469  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  48848753 agaagctaaggctaatctacccggttttttgagaaacttgttcttccaagaggctaatctagtttgcattttctcaatg 48848675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 530 - 626
Target Start/End: Complemental strand, 48846535 - 48846439
Alignment:
Q  530 acaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggcggctgtcacttctt 626  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  48846535 acaatgtgccaatactgtttaaagaagatacattgaaacccatcaggaccaggggctttgtaaggtttcatggagtgaagggcggctgtcacttctt 48846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 48846626 - 48846547
Alignment:
Q  466 aatggatgagtcaaaatggctggtgtggaaggctgagtgaacaaggttgaagacgtcatctccaacaatgtgccaatact 545  Q
    |||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48846626 aatggaggggtcgaaatggccggtgtggaaggctgagtgaacaaggttgaagacgtcatctccaacaatgtgccaatact 48846547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 375
Target Start/End: Original strand, 24132668 - 24132796
Alignment:
Q  247 tttatcccaaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagc 346  Q
    ||||| |||||||||||||||||| ||||| |||||   ||||||||| || |||||| | || ||||||| ||||||||| || || ||||| ||||||    
T  24132668 tttattccaaccaaccaaatgaatacctttattgttgctatctctccaaataaaattatgagtggtttgattaatgctatcacaaatactttgagggagc 24132767  T
Q  347 caattaatctgcatgtaatacgaagggat 375  Q
    |||  ||||||||| ||||| || |||||    
T  24132768 caagcaatctgcatataataagatgggat 24132796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 7587093 - 7587189
Alignment:
Q  288 ctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataa 384  Q
    ||||||| || ||||| || |||||||||||||||||||| |||||  |||| || ||||||||||||||||| ||||| |  |||||| |||||||    
T  7587093 ctctccaaataaaattgcgagttgtttgatcaatgctatcacagatattttgtggtagccaattaatctgcatataataagtggggatagatgataa 7587189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 24302370 - 24302257
Alignment:
Q  253 ccaaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaatta 352  Q
    |||||| |||| ||| |||||||||| ||||| ||||||||| |||||||| ||  | | ||||||||| ||||| || || ||||| |  |||||| ||    
T  24302370 ccaacctaccagatggatgcctttgtcgttagcatctctccaaatgaaattgcggatagcttgatcaatactatcacaaatactttgagaaagccaaata 24302271  T
Q  353 atctgcatgtaata 366  Q
    ||||||||||||||    
T  24302270 atctgcatgtaata 24302257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 605
Target Start/End: Original strand, 46785017 - 46785108
Alignment:
Q  514 gaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagt 605  Q
    ||||| ||| || |||||||||||||| || | ||| |||||||| ||||| ||  ||||||||||||  | ||||||||||||||||||||    
T  46785017 gaagatgtcttcgccaacaatgtgccagtattgtttgaagaagatgcattggaaaccatccggaccaggagatttgtagggtttcatggagt 46785108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 3882378 - 3882314
Alignment:
Q  311 gtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggat 375  Q
    ||||||||||||  |||||| ||| |||| || ||||| ||||| ||||||||||| ||||||||    
T  3882378 gtttgatcaatggcatcgcatatgttttgtggaagccagttaatttgcatgtaataggaagggat 3882314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 91 - 453
Target Start/End: Original strand, 31728814 - 31729176
Alignment:
Q  91 caagtgtggggctgctgaatatttgtgagtaagaaattggacccatagcttggtggagtgctgaaccatgtcccaaaccaatgtaccaaggagacaaata 190  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  31728814 caagtgcggggctgctgaatatttgtgagtaagaagttggacccatagcttggtggagtgttgaaccatgtcccagaccaatttaccaaggagacaaata 31728913  T
Q  191 ttcattcttctagatgagcggatacccaagcctcccatgatttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  31728914 ttcattcttctagatgagcggatacccaagcctcccatgatttttggtttaactattttatcccaaccaatcaaatgaatgcctttgttattagaatctc 31729013  T
Q  291 tccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacaga 390  Q
    | |||||||||||||| || ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  31729014 ttcagatgaaattacgcgtcgtttgatcaatgctatcacaaatgctttggggaagccaattaatttgcatgtaatacgaagggatagatgataaaacaga 31729113  T
Q  391 agaagctaaggctaatctacccagttttttgagaagcttgttcttcctagaggctaatctagt 453  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  31729114 agaagctaaggctaatctacccgatttgttgagaagcttgttcttccaagaggctaatctagt 31729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 6640464 - 6640552
Alignment:
Q  272 cctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcat 360  Q
    ||||||||||| ||  || ||||||||||||| || |||||||||||||| ||||| || ||  |||| || |||||||||||||||||    
T  6640464 cctttgttgttggatcctttccagatgaaattgcgggttgtttgatcaatactatcacaaatattttgaggaagccaattaatctgcat 6640552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 32873949 - 32874012
Alignment:
Q  312 tttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggat 375  Q
    |||||||||||||||| ||||||||||| || |||||| ||| ||||||||| ||||| |||||    
T  32873949 tttgatcaatgctatcacagatgctttgaggaagccaagtaacctgcatgtagtacgatgggat 32874012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 31845451 - 31845333
Alignment:
Q  254 caaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaa 353  Q
    ||||| |||||||| || ||||||||||| || ||  |||| ||||| ||  | |||||||  ||||||||||| || ||||||||||| || |||||||    
T  31845451 caacctaccaaatggatacctttgttgtttgagtccttccaaatgaagttgtgggttgttttgtcaatgctatcacaaatgctttggggaagtcaattaa 31845352  T
Q  354 tctgcatgtaatacgaagg 372  Q
    | |||||||| || |||||    
T  31845351 tatgcatgtagtaagaagg 31845333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 521 - 612
Target Start/End: Complemental strand, 23944616 - 23944525
Alignment:
Q  521 tcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc 612  Q
    ||||||||||||||||| || || |  || |||||||||||||||||  |||| || |||| || |||| |||||||||||| || ||||||    
T  23944616 tcatctccaacaatgtgtcagtattgcttgaagaagatacattgaaaaccatctgggccaggggctttgaagggtttcatggtgttaagggc 23944525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 469
Target Start/End: Original strand, 28282002 - 28282127
Alignment:
Q  344 agccaattaatctgcatgtaatacgaagggataaatgataaaacagaagaagctaaggctaatctacccagttttttgagaagcttgttcttcctagagg 443  Q
    |||||| ||||||||||||| || ||||| | | | |||||| |||| ||||||||||||| |||||   | || |||| ||| ||||||||||  || |    
T  28282002 agccaagtaatctgcatgtagtaagaaggaagagaggataaagcagatgaagctaaggctactctacatggcttgttgataagtttgttcttccatgatg 28282101  T
Q  444 ctaatctagtttgcattttctcaatg 469  Q
    | | ||||||||| | ||||||||||    
T  28282102 caagtctagtttgtactttctcaatg 28282127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 388
Target Start/End: Original strand, 11586407 - 11586535
Alignment:
Q  260 accaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgca 359  Q
    ||||||||||| || |||||  ||||  ||| ||| || ||||| | ||||||||| ||||| |||||| | ||| |||| || |||||||| || ||||    
T  11586407 accaaatgaatacccttgttactagagcctcgccaaataaaattccttgttgtttggtcaatactatcgaaaatgttttgaggaagccaattgatttgca 11586506  T
Q  360 tgtaatacgaagggataaatgataaaaca 388  Q
    |||| || ||||| ||  |||||||||||    
T  11586507 tgtagtatgaaggaatggatgataaaaca 11586535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 92 - 469
Target Start/End: Original strand, 1578430 - 1578807
Alignment:
Q  92 aagtgtggggctgctgaatatttgtgagtaagaaattggacccatagcttggtggagtgctgaaccatgtcccaaaccaatgtaccaaggagacaaatat 191  Q
    |||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  1578430 aagtttggggctgctgaatatttgtcagtaagaagttggactcatagcttggtggagtgttgaaccatgtcccaaaccaatttacaaaggagacaaatat 1578529  T
Q  192 tcattcttctagatgagcggatacccaagcctcccatgatttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctct 291  Q
    |||||||||||| ||  |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||||||||||||    
T  1578530 tcattcttctagctgtacggatacccaagccacccatgatttttggtttagctattttatccctaccaaccaaatgaatgcatctattgttagaatctct 1578629  T
Q  292 ccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacagaa 391  Q
    ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||    
T  1578630 ccatatgaaattacgggttgtttgatcaatgttatcgcagatgctttgggggagccaattaatctgcatgtaataagtagggatagatgataaaacataa 1578729  T
Q  392 gaagctaaggctaatctacccagttttttgagaagcttgttcttcctagaggctaatctagtttgcattttctcaatg 469  Q
    |||||||||||||||||| || |||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  1578730 gaagctaaggctaatctatccggtttgttgaaaagcttgttcttccaagaggctaatctagtttacattttctcaatg 1578807  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 475 - 626
Target Start/End: Original strand, 1579665 - 1579816
Alignment:
Q  475 gtcaaaatggctggtgtggaaggctgagtgaacaaggttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatcc 574  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  1579665 gtcaatatggccggtgtggaaggctgagtgaacaaggttgaagacgtcatctccaacaatgtgccaatattttttaaagaagatacattgaaactcatcc 1579764  T
Q  575 ggaccagaggttttgtagggtttcatggagtgaagggcggctgtcacttctt 626  Q
    | ||||| || |||||||||||||||||||||||| ||||| ||||||||||    
T  1579765 gaaccaggggctttgtagggtttcatggagtgaagagcggcagtcacttctt 1579816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 26708169 - 26708277
Alignment:
Q  288 ctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaac 387  Q
    ||||||| || ||||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||| |  || ||||||||||| ||    
T  26708169 ctctccaaataaaattgcgagttgtttgatcaatgctatcacatatgttttgggggagccaattaatctgcatataatatgttggaataaatgataagac 26708268  T
Q  388 agaagaagc 396  Q
     ||||||||    
T  26708269 cgaagaagc 26708277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 41655770 - 41655715
Alignment:
Q  311 gtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaata 366  Q
    |||||||||||||||||||||||| |||| |||||||||||||  |||||||||||    
T  41655770 gtttgatcaatgctatcgcagatgttttgagggagccaattaagttgcatgtaata 41655715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 612
Target Start/End: Original strand, 23133137 - 23133222
Alignment:
Q  527 ccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc 612  Q
    |||||||||||||| ||||  || |||||||| || || ||  |||||||||||| || |||||||||||||||||||| ||||||    
T  23133137 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggc 23133222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 512 - 626
Target Start/End: Complemental strand, 8574 - 8460
Alignment:
Q  512 ttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaaggg 611  Q
    ||||| || ||||||||||||||||||||| | | ||||||||| ||||| |||||  |||| || |||| || ||||||||| ||||||||||| ||||    
T  8574 ttgaaaacatcatctccaacaatgtgccaaaattgtttaaagaaaatacaatgaaaaccatcagggccaggggctttgtagggcttcatggagtggaggg 8475  T
Q  612 cggctgtcacttctt 626  Q
    ||| |||||||||||    
T  8474 cggttgtcacttctt 8460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 511 - 621
Target Start/End: Complemental strand, 26790929 - 26790819
Alignment:
Q  511 gttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagg 610  Q
    |||||| |||||||| |||||||||||| |||| | |||||| || ||||| |||||  |||| || |||| || ||||||||| ||| ||||||| |||    
T  26790929 gttgaaaacgtcatcaccaacaatgtgcgaatattgtttaaaaaaaatacaatgaaaaccatcggggccaggggctttgtagggcttcgtggagtggagg 26790830  T
Q  611 gcggctgtcac 621  Q
    |||||||||||    
T  26790829 gcggctgtcac 26790819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 16322062 - 16321963
Alignment:
Q  506 acaaggttgaagacgtcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagt 605  Q
    ||||||| ||| ||||| || |||||||||||||| || | ||||||||| || || |||||  |||| |||||||  | ||||||||||||||||||||    
T  16322062 acaaggtggaaaacgtcgtcaccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagt 16321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 5542143 - 5542085
Alignment:
Q  308 gttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaata 366  Q
    ||||||||||||||| | ||||| ||  ||||||| |||||||||| ||||||||||||    
T  5542143 gttgtttgatcaatgttgtcgcaaatattttggggaagccaattaagctgcatgtaata 5542085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 3778532 - 3778584
Alignment:
Q  308 gttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcat 360  Q
    ||||| |||||||||||||| || ||  ||||||| |||||||||||||||||    
T  3778532 gttgtctgatcaatgctatcacaaatattttggggaagccaattaatctgcat 3778584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 231 - 363
Target Start/End: Original strand, 17522 - 17654
Alignment:
Q  231 tttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgca 330  Q
    |||||||| |||| | ||||| ||||||||||||||| || |||||||  ||||   ||||||| ||||| ||  | ||||| | ||||||  | || ||    
T  17522 tttttggtctagcaattttattccaaccaaccaaatggattcctttgtcattagggcctctccaaatgaagttgtgagttgtctaatcaatattgtcaca 17621  T
Q  331 gatgctttgggggagccaattaatctgcatgta 363  Q
    ||||||||| |||||||||||||||||||||||    
T  17622 gatgctttgagggagccaattaatctgcatgta 17654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 14937691 - 14937795
Alignment:
Q  260 accaaatgaatgcctttgtt-gttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgc 358  Q
    ||||| |||||||||||||| ||||| |  |||||||||||||||||| || ||||||||||||||||| || || || ||||| ||||||  ||| |||    
T  14937691 accaagtgaatgcctttgttagttagcaaatctccagatgaaattacgggtggtttgatcaatgctatcacaaatactatggggaagccaaacaatatgc 14937790  T
Q  359 atgta 363  Q
    |||||    
T  14937791 atgta 14937795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 612
Target Start/End: Complemental strand, 20284444 - 20284359
Alignment:
Q  527 ccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc 612  Q
    |||||||||||||| ||||  || |||||||| || || ||  |||||||||||| || |||||||||||||||||||| ||||||    
T  20284444 ccaacaatgtgccagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggc 20284359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 23466024 - 23465960
Alignment:
Q  299 aaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgta 363  Q
    |||||||| || |||||||||||| | ||||| ||  |||| ||||||||||||| |||||||||    
T  23466024 aaattacgagtagtttgatcaatgttgtcgcaaatattttgagggagccaattaagctgcatgta 23465960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 44274311 - 44274199
Alignment:
Q  299 aaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacagaagaagcta 398  Q
    ||||| || |||||||||| |||| |||| || ||| |||| || ||||||||||| |||||||||||  | |||||  | ||||||| ||||| |||||    
T  44274311 aaattccgggttgtttgataaatgttatcacaaatgttttgaggaagccaattaatttgcatgtaataaaacgggatggaagataaaatagaagtagcta 44274212  T
Q  399 aggctaatctacc 411  Q
      | |||||||||    
T  44274211 gagataatctacc 44274199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 387
Target Start/End: Original strand, 50236033 - 50236129
Alignment:
Q  291 tccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaac 387  Q
    |||| |||||||| || | |||||| ||||| ||||| || ||  |||| |||||||||||||||||||| || || | ||||||| | ||||||||    
T  50236033 tccatatgaaattgcgggatgtttggtcaatactatcacaaatattttgagggagccaattaatctgcatatagtaggtagggatagaggataaaac 50236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 50452558 - 50452494
Alignment:
Q  311 gtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggat 375  Q
    ||||||||||||  |||||| ||| |||| || ||||| ||||| ||||||||||| ||||||||    
T  50452558 gtttgatcaatggcatcgcatatgttttgtggaagccagttaatttgcatgtaataggaagggat 50452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 53240891 - 53240761
Alignment:
Q  236 ggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgc 335  Q
    |||||||||| ||| | ||||||||| | |||||  ||||| || || | | || |||| || |||||||| |||||||| |||||   |||||| ||||    
T  53240891 ggtttagctatttttttccaaccaactagatgaacccctttattattggcacctttccaaataaaattacgggttgtttggtcaatatcatcgcaaatgc 53240792  T
Q  336 tttgggggagccaattaatctgcatgtaata 366  Q
    ||||||| ||||| |||||||||||||||||    
T  53240791 tttggggaagccagttaatctgcatgtaata 53240761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 612
Target Start/End: Complemental strand, 11896743 - 11896658
Alignment:
Q  527 ccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatggagtgaagggc 612  Q
    ||||||||||| || ||||  || |||||||| || || ||  |||||||||||| || |||||||||||||||||||| ||||||    
T  11896743 ccaacaatgtgtcagtactgcttgaagaagatgcaatggaaaccatccggaccaggggctttgtagggtttcatggagttaagggc 11896658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 38646665 - 38646757
Alignment:
Q  307 tgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggataaatgataaaacagaagaagctaa 399  Q
    ||||||||| ||||| || ||||||||| |||| || |||||||| || |||||||| || ||||| ||  ||||||||||||| | ||||||    
T  38646665 tgttgtttggtcaatactttcgcagatgttttgaggaagccaattgatttgcatgtagtatgaaggaatggatgataaaacagaggtagctaa 38646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 602
Target Start/End: Original strand, 17718907 - 17718988
Alignment:
Q  521 tcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatgg 602  Q
    ||||||||||| |||||||| |||| ||| || ||||||||||||||  |||| ||||| | || |||||| || |||||||    
T  17718907 tcatctccaactatgtgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcatgg 17718988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 602
Target Start/End: Original strand, 19020136 - 19020217
Alignment:
Q  521 tcatctccaacaatgtgccaatactatttaaagaagatacattgaaactcatccggaccagaggttttgtagggtttcatgg 602  Q
    ||||||||||| |||||||| |||| ||| || ||||||||||||||  |||| ||||| | || |||||| || |||||||    
T  19020136 tcatctccaactatgtgccagtactgtttgaaaaagatacattgaaaaccatctggaccgggggctttgtacggcttcatgg 19020217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 26432179 - 26432231
Alignment:
Q  308 gttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcat 360  Q
    |||||||||||||| ||||| || || || || ||||||||||||||||||||    
T  26432179 gttgtttgatcaatactatcacaaatactctgagggagccaattaatctgcat 26432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 27849624 - 27849710
Alignment:
Q  286 atctctccagatgaaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagg 372  Q
    ||||||||| ||||||||||| || |||||||| |||||||| || ||| |||| || ||||||  |||||||||||| || |||||    
T  27849624 atctctccaaatgaaattacgggtggtttgatctatgctatcacatatgttttgaggaagccaagcaatctgcatgtagtaagaagg 27849710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 24990140 - 24990216
Alignment:
Q  299 aaattacgtgttgtttgatcaatgctatcgcagatgctttgggggagccaattaatctgcatgtaatacgaagggat 375  Q
    |||||||| |||||||||||||||  ||| || ||| |||| || ||||||||||| |||||||| || ||||||||    
T  24990140 aaattacgagttgtttgatcaatggaatcacaaatgttttgcggaagccaattaatttgcatgtagtaggaagggat 24990216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 12645389 - 12645532
Alignment:
Q  232 ttttggtttagctaatttatcccaaccaaccaaatgaatgcctttgttgttagaatctctccagatgaaattacgtgttgtttgatcaatgctatcgcag 331  Q
    ||||||| |||| | ||| | ||||||||| | || ||||||||||||| | | ||||||||| |||||||| |  || |||||||||||| | || ||     
T  12645389 ttttggtctagcaatttttttccaaccaactagataaatgcctttgttgcttgcatctctccaaatgaaatttctagtagtttgatcaatgttgtcacaa 12645488  T
Q  332 atgctttgggggagccaattaatctgcatgtaatacgaagggat 375  Q
    || ||||| ||  |||||  ||| ||||||||||| ||||||||    
T  12645489 atactttgaggatgccaaacaatttgcatgtaataggaagggat 12645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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