View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_190 (Length: 246)
Name: NF0809_low_190
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_190 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28458007 - 28458231
Alignment:
| Q |
1 |
tacgttgacttaaagaaaattttatttttc---gggtagaaagactcaagaaaaacgtccctactaactctcaatttgataatgaaactatactattaat |
97 |
Q |
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| T |
28458007 |
tacgttgacttaaagaaactttttttttttttggggtagaaagactcaagaaaaacgtctctactaactctcgatttgataatgaaactatactattaat |
28458106 |
T |
|
| Q |
98 |
ccttttgaatcatgtactatcctccaatcacattattcccaatgcattgcattgatactgtataatacatgaaagaatagaaaagaaataataacaagaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28458107 |
ccttttgaatcatgtactatcctccaatcacattattcccaatgcattgcattgatactgtataatacatgaaagaatagaaaagaaataataacaagaa |
28458206 |
T |
|
| Q |
198 |
aaattcatgtgactcaaattcttga |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28458207 |
aaattcatgtgactcaaattcttga |
28458231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 39183011 - 39183173
Alignment:
| Q |
58 |
ctactaactctcaatttgataatgaaactata--ctattaatccttttgaatcatgtactatcctccaatcacattattcccaatgcattgcattgatac |
155 |
Q |
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|||||||||||||| | |||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
39183011 |
ctactaactctcaaatcgataatgaaaatataaactatttatccttttgaatcatgtactatcc---aatcacattattcccaatgcattgcactgatag |
39183107 |
T |
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| Q |
156 |
tgtataatacatgaaagaatagaaaagaaataataacaagaaaaattcatgtgactcaaattcttga |
222 |
Q |
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| T |
39183108 |
agtataatacatgaaagaacagaaaa-aaataatctcaagaataattcatgtgactcaaattcttga |
39183173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 39187231 - 39187334
Alignment:
| Q |
120 |
tccaatcacattattcccaatgcattgcattgatactgtat-aatacatgaaagaatagaaaagaaataataacaagaaaaattcatgtgactcaaattc |
218 |
Q |
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||||||||||||||| ||||||||||||| ||||| | || ||||||||| | || |||||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
39187231 |
tccaatcacattatttccaatgcattgcactgatatagaattaatacatgacaaaacagaaaataaataatcacaagaataattcatgtgactcaaattc |
39187330 |
T |
|
| Q |
219 |
ttga |
222 |
Q |
| |
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|||| |
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|
| T |
39187331 |
ttga |
39187334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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