View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_194 (Length: 234)
Name: NF0809_low_194
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_194 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37147825 - 37147692
Alignment:
| Q |
1 |
cttcaggctatggttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgtttt |
100 |
Q |
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| T |
37147825 |
cttcaggctatggttttcgtaatggattgataatcgctattaatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgtttt |
37147726 |
T |
|
| Q |
101 |
caacttcgtccaacaaacatcccttgtaatttat |
134 |
Q |
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| T |
37147725 |
caacttcgtccaacaaacatcccttgtaatttat |
37147692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 7894431 - 7894551
Alignment:
| Q |
14 |
ttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaa |
113 |
Q |
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| T |
7894431 |
ttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaattcacaatttcgttttcaatttcatccaa |
7894530 |
T |
|
| Q |
114 |
caaacatcccttgtaatttat |
134 |
Q |
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| T |
7894531 |
caaacatttattgtaatttat |
7894551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 35718141 - 35718200
Alignment:
| Q |
73 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaattt |
132 |
Q |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaattt |
35718200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 35411163 - 35411100
Alignment:
| Q |
71 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttat |
134 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttat |
35411100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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