View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_198 (Length: 221)
Name: NF0809_low_198
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_198 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 23144875 - 23145062
Alignment:
| Q |
24 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttaatt |
123 |
Q |
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| T |
23144875 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttgatt |
23144974 |
T |
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| Q |
124 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
211 |
Q |
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| T |
23144975 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttgtgtctgtg |
23145062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 23144819 - 23144848
Alignment:
| Q |
1 |
tagttaaggaggcgttgatcgttggaagtg |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23144819 |
tagttaaggaggcgttgatcgttggaagtg |
23144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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