View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_21 (Length: 612)
Name: NF0809_low_21
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 295 - 560
Target Start/End: Complemental strand, 38085422 - 38085157
Alignment:
| Q |
295 |
acacatttagtttactggattgttaaaaataattttatatacggtcatattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcat |
394 |
Q |
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| T |
38085422 |
acacatttagtttactggattgttaaaaataattttatatacggtcgtattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcat |
38085323 |
T |
|
| Q |
395 |
ggttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagcccc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38085322 |
ggttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagcccc |
38085223 |
T |
|
| Q |
495 |
gttacgtaaatgactctggaaaatcaattcaggtccttttaatttccttcctttttgtttgctaca |
560 |
Q |
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| T |
38085222 |
gttacgtaaatgactctggaaaatcaattcaggtccttttaatttccttcctttttgtttgctaca |
38085157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 38085653 - 38085420
Alignment:
| Q |
30 |
cccgttgttaagcaatactacaaaaatcatgttaaggtatcaaaattctttcaaattatatcttgaattaccactgtaaatatatatatagtgattgtta |
129 |
Q |
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| T |
38085653 |
cccgttgttaagcaatactacaaaaatcatgttaaggtatcaaaattctttcaaattatatcttgaattagcactgtaaatatatatatagcgattgtta |
38085554 |
T |
|
| Q |
130 |
atatacaaaattcatgttaaggtaccataattctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtgcaaatac |
229 |
Q |
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| T |
38085553 |
atatacaaaattcatgttaaggtaccataattctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtggaaatac |
38085454 |
T |
|
| Q |
230 |
aacaaaattaaaccaatgggaattattttttaca |
263 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38085453 |
aacaaaattaaaccaatgggaattattttttaca |
38085420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 308 - 528
Target Start/End: Complemental strand, 38090342 - 38090124
Alignment:
| Q |
308 |
actggattgttaaaaataattttatatacggtcatattttcatgtatgtaacccaaaaagattggtagcattattcttttgattcatggttgattacagg |
407 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||||||| | ||| |||||| |||| |
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| T |
38090342 |
actggattgttaaaagtaattttatatactgtcatgttttcatgtatttaaccctaaaa-tttggcaacattattctttgg----atgattgattgcagg |
38090248 |
T |
|
| Q |
408 |
ctgtgctgacaagaaagaacaccattagtgg------agtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagccccgttacgt |
501 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||| |
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| T |
38090247 |
ttgtgcttacaagaaagaacaccattagtggggtgttagtgttatacaaggatgacccaacaatttttgcttgggagctaatgaatgaacctcg---cgt |
38090151 |
T |
|
| Q |
502 |
aaatgactctggaaaatcaattcaggt |
528 |
Q |
| |
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| |||||| ||||||||| |||||||| |
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| T |
38090150 |
acatgactttggaaaatcgattcaggt |
38090124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 133 - 285
Target Start/End: Complemental strand, 38090618 - 38090469
Alignment:
| Q |
133 |
tacaaaattcatgttaaggtaccataattctttaattctgtaaatcttgaattagttctataaatttgtactggcaatttacttttcgtgcaaatacaac |
232 |
Q |
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||||||| ||||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||||| |||| ||||||||||| || ||||||||| |
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| T |
38090618 |
tacaaaaatcatgttaaagtaccataattctttaattctatacatcttgaattagttttataaatttgtattggctatttacttttcctggaaatacaac |
38090519 |
T |
|
| Q |
233 |
aaaattaaaccaatgggaattattttttacaataagccaatgcataaattaat |
285 |
Q |
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||||||| |||||||||| |||| |||||||||||| || |||||||||| |
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| T |
38090518 |
aaaattataccaatggga---tttttatacaataagccactgtataaattaat |
38090469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 398 - 534
Target Start/End: Complemental strand, 38142197 - 38142058
Alignment:
| Q |
398 |
tgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagccccgtt |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| || || |||||||||||||| |||||||| ||||||||||||||||| || |||| |
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| T |
38142197 |
tgattgcaggctgtgctgacaagaaagaacaccattaatggagtattgtataaggatgacccaaccatttttgcatgggagcttatgaatgaacctcgtt |
38142098 |
T |
|
| Q |
498 |
acgta---aatgactctggaaaatcaattcaggtcctttt |
534 |
Q |
| |
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| || |||||||| ||||||||||||||||||||||| |
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| T |
38142097 |
gcatatttaatgactccggaaaatcaattcaggtcctttt |
38142058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 398 - 534
Target Start/End: Complemental strand, 38155350 - 38155211
Alignment:
| Q |
398 |
tgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagccccgtt |
497 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | || || |||||||| ||||| |||||||||||||| ||||||||||||||||| || |||| |
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| T |
38155350 |
tgattgcaggccgtgctgacaagaaagaacaccataaacggggtattatacaaagatgatccaactatttttgcatgggagcttatgaatgaacctcgtt |
38155251 |
T |
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| Q |
498 |
acgta---aatgactctggaaaatcaattcaggtcctttt |
534 |
Q |
| |
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| || |||||||||||||||||||||||||||||||| |
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| T |
38155250 |
gcataaataatgactctggaaaatcaattcaggtcctttt |
38155211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 529
Target Start/End: Complemental strand, 38110610 - 38110478
Alignment:
| Q |
397 |
ttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttatgaatgagccccgt |
496 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| || | ||| |||||||| |||||||| ||||| ||||| |||||||||||||| || || || ||| |
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| T |
38110610 |
ttgattgcaggctgtgctgacaagaaataacactataaatggggtgttatataaggatgatccaaccattttcgcttgggagcttataaacgaaccacgt |
38110511 |
T |
|
| Q |
497 |
tacgtaaatgactctggaaaatcaattcaggtc |
529 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| |
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| T |
38110510 |
tatgtaaatgactctggaaattcaattcaggtc |
38110478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 38090632 - 38090586
Alignment:
| Q |
34 |
ttgttaagcaatactacaaaaatcatgttaaggtatcaaaattcttt |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || |||||||| |
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|
| T |
38090632 |
ttgttaagcaatactacaaaaatcatgttaaagtaccataattcttt |
38090586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 38110752 - 38110714
Alignment:
| Q |
30 |
cccgttgttaagcaatactacaaaaatcatgttaaggta |
68 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
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|
| T |
38110752 |
cccgttgttaagcaatactacaaaaaccatgttaaggta |
38110714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 38155660 - 38155614
Alignment:
| Q |
34 |
ttgttaagcaatactacaaaaatcatgttaaggtatcaaaattcttt |
80 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
38155660 |
ttgttaagcaatactacaaaaacaatgttaaggtatcataattcttt |
38155614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 38142314 - 38142277
Alignment:
| Q |
34 |
ttgttaagcaatactacaaaaatcatgttaaggtatca |
71 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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|
| T |
38142314 |
ttgttaagcaatactacaaaaacaatgttaaggtatca |
38142277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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