View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_23 (Length: 594)

Name: NF0809_low_23
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_23
NF0809_low_23
[»] chr5 (3 HSPs)
chr5 (10-448)||(38943753-38944191)
chr5 (38-104)||(22408710-22408775)
chr5 (35-67)||(11167955-11167987)
[»] chr1 (3 HSPs)
chr1 (34-107)||(10231036-10231109)
chr1 (8-105)||(29816335-29816432)
chr1 (34-66)||(37008488-37008520)
[»] chr7 (2 HSPs)
chr7 (36-105)||(9477353-9477421)
chr7 (10-105)||(15327908-15328002)
[»] chr8 (2 HSPs)
chr8 (34-93)||(45522367-45522424)
chr8 (10-66)||(2044924-2044980)
[»] chr6 (1 HSPs)
chr6 (10-93)||(12798966-12799050)
[»] chr3 (1 HSPs)
chr3 (34-105)||(33687876-33687947)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Complemental strand, 38944191 - 38943753
Alignment:
Q  10 aacaatataaaatacaatagaactcctaagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgctaag 109  Q
    ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||| |||||||||    
T  38944191 aacaaaataaaatataatacaacttctaagtattgtcccttttgcaattttggccccacagactaagtttaaccgaatcaatgttgatgtagacgctaag 38944092  T
Q  110 caattaaaaacttaaatacacgactagacgccatgtgtgaagaagggaatttggatgagacagaaaattttggaacatagatagaatacgtgggcgtggc 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38944091 caattaaaaacttaagtacacgactagacgccatgtgtgaagaagggaatttggatgagacggaaaattttggaacatagatagaatacgtgggcgtggc 38943992  T
Q  210 cacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgttaataaattttcaaatgtcgaaatttacatatatgtttaatgtct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38943991 cacacaagggcctcatttaatttttaaaaagttttgagagagaagaaccacatgttaataaattttcaaatgtcgaaatttacatatatgtttaatgtct 38943892  T
Q  310 agggggtcattgatgttactgctataagggtgcaatgcttctattgaagttgccacctgatagttatttttcatgcgtaatgtagttgtgtggcagcaac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38943891 agggggtcattgatgttactgctataagggtgcaatgcttctattgaagttgccacctgatagttatttttcatgcgtaatgtagttgtgtggcagcaac 38943792  T
Q  410 tatttggtggaggaatcattgaaggaaaaccattaaatt 448  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  38943791 tatttggtggaggaatcattgaaggaaaacccttaaatt 38943753  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 22408775 - 22408710
Alignment:
Q  38 agtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacg 104  Q
    |||| ||||||||||||| |||||||||| |||||||| ||| ||||| |||||||||| |||||||    
T  22408775 agtactgtcccttttgcagttttggcccc-cagaccaattttgaccaagtcaatgctaacgtggacg 22408710  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 11167955 - 11167987
Alignment:
Q  35 ctaagtattgtcccttttgcaattttggcccca 67  Q
    |||||||||| ||||||||||||||||||||||    
T  11167955 ctaagtattgccccttttgcaattttggcccca 11167987  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 10231109 - 10231036
Alignment:
Q  34 cctaagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgcta 107  Q
    |||||||| ||||||||||||| |||||||||| ||||||||  |||||||| ||||||||||||| |||||||    
T  10231109 cctaagtactgtcccttttgcagttttggcccctcagaccaatgttaaccaagtcaatgctaatgtagacgcta 10231036  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 29816432 - 29816335
Alignment:
Q  8 ccaacaatataaaatacaatagaactc-ctaagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgc 105  Q
    ||||||| ||||||||||||| ||| | ||||||||||||| ||||||| |||||||||| ||  |||| ||| ||||| |||||||| || |||||||    
T  29816432 ccaacaaaataaaatacaatacaaccctctaagtattgtccattttgcagttttggcccc-catgccaattttgaccaagtcaatgctgatttggacgc 29816335  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 37008520 - 37008488
Alignment:
Q  34 cctaagtattgtcccttttgcaattttggcccc 66  Q
    ||||||||||| |||||||||||||||||||||    
T  37008520 cctaagtattgccccttttgcaattttggcccc 37008488  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 9477421 - 9477353
Alignment:
Q  36 taagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgc 105  Q
    ||||||||| || |||||||||||||||||| |||||||| ||| ||||| |||||||  ||||||||||    
T  9477421 taagtattgcccattttgcaattttggcccc-cagaccaattttgaccaagtcaatgcacatgtggacgc 9477353  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 15328002 - 15327908
Alignment:
Q  10 aacaatataaaatacaatagaactcc-taagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgc 105  Q
    ||||| ||||||||||||| | | || |||||| ||||||||||||| ||||||  || |||||||| ||||| ||| |||||||| | ||||||||    
T  15328002 aacaaaataaaatacaatacagccccctaagtactgtcccttttgcagttttgg--cctcagaccaattttaatcaagtcaatgctgacgtggacgc 15327908  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 45522424 - 45522367
Alignment:
Q  34 cctaagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgc 93  Q
    ||||||||||| |||||||||| |||||||||  |||||||| ||||||||| |||||||    
T  45522424 cctaagtattgccccttttgcagttttggccc--cagaccaattttaaccaagtcaatgc 45522367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2044980 - 2044924
Alignment:
Q  10 aacaatataaaatacaatagaactcctaagtattgtcccttttgcaattttggcccc 66  Q
    ||||| ||||||||||||  | | |||||||||| ||||||||||| ||||||||||    
T  2044980 aacaaaataaaatacaatctagcccctaagtattttcccttttgcagttttggcccc 2044924  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 12799050 - 12798966
Alignment:
Q  10 aacaatataaaatacaatagaactcc-taagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgc 93  Q
    ||||| ||||||||||| | ||| || ||||||||||||||| |||| |||||||||| ||| |||| ||| ||||| |||||||    
T  12799050 aacaaaataaaatacaaaacaaccccctaagtattgtcccttctgcagttttggccccccaggccaattttgaccaagtcaatgc 12798966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 33687947 - 33687876
Alignment:
Q  34 cctaagtattgtcccttttgcaattttggccccacagaccaagtttaaccaaatcaatgctaatgtggacgc 105  Q
    |||||||| || | |||||||| |||||| ||| |||||||| ||| |||||||||||||| | ||||||||    
T  33687947 cctaagtactgcctcttttgcagttttggtcccccagaccaattttgaccaaatcaatgctgacgtggacgc 33687876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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