View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_24 (Length: 590)
Name: NF0809_low_24
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 69 - 561
Target Start/End: Complemental strand, 31083238 - 31082747
Alignment:
| Q |
69 |
aaaagaattaatgtttgtttaagttttctgaatnnnnnnngttatgcaaattttnnnnnnnttaataaacttgttgatggacgacatattactagtttac |
168 |
Q |
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| T |
31083238 |
aaaagaattaatgtttgtttaagttttctgaataaaaaaagttatgcaaatttttaaaaaattaataaacttgttaatggac---atattactagtttac |
31083142 |
T |
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| Q |
169 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31083141 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
31083042 |
T |
|
| Q |
269 |
aatcagttattgcattttcgattcgatgatcactctcataccaggttcaaagggtttaagctacagggacctttgttacttttactaaataaactcaagt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
31083041 |
aatcagttattgcattttcgattcgatgatcactctcataccgggttcaaaggg-ttaagctgcagggatctttgttacttttactaaataaactcaagt |
31082943 |
T |
|
| Q |
369 |
ttaaatgcactttttattcccttattttnnnnnnnngtgaagttttgtccccttattttaaaaattggtttattggttcactagttca-nnnnnnnnaat |
467 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
31082942 |
ttaaatgcactttttattcccttattttaaaaaaaagtgaagttttgtccccttattttaaaatttggtttattggttcactagttcatttttttttaat |
31082843 |
T |
|
| Q |
468 |
gtatcatttctgtaacattttagtatca--tttacatatgcttcatatacgctgattatgtgacaacacttatgtagcctttttgtttcttgcatg |
561 |
Q |
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| T |
31082842 |
gtatcatttctatcacattttagtatcatttttacatatgttgcatattcgctgatgatgtaacgacacttatgtagcctttttgtttcttgcatg |
31082747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 31083324 - 31083253
Alignment:
| Q |
13 |
aatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31083324 |
aatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
31083253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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