View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_28 (Length: 564)
Name: NF0809_low_28
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 95 - 556
Target Start/End: Complemental strand, 33642312 - 33641848
Alignment:
| Q |
95 |
cttgattcaatacaaagatcatcatgttctgacaaactcttgggagaattaccagaattcttcttttgatcactgttttcttttttcctttgtgattcac |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33642312 |
cttgattcaatacaaagatcatcatgttctgacaaactcttgggagaattaccagaattcttcttctgatcactgttttcttttttcctttgtgattcac |
33642213 |
T |
|
| Q |
195 |
atgtcaagtttagctcaaggtctaagctcatgtgatcggaaggaggttgtcgcaggctttgttttgaggtttctatcgttgtccgatccggtcttgtgtt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33642212 |
atgtcaagtttagctcaaggtctaagctcatgtgatcagaaagaggttgtcgcaggcttcgttttgaggtttctatcgttgtccgatccggtcttgtgtt |
33642113 |
T |
|
| Q |
295 |
acacaattgtatctgccctgactgcat---nnnnnnnnnnntaataattaaagattgatcataagatatgatatcattggaattatgtatgaagtttgac |
391 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33642112 |
acacaattgtatctgccctgactgcataaaaaaaataataataataattaaagattgatcataagatatgatatcattggaattatgtatgaagtttgac |
33642013 |
T |
|
| Q |
392 |
aatatatatacaatacatacctgaataccaaggtgctggcaccaattatttgaaggaaacatgatctctaggggaggctttgtatcaaaggtggatttcc |
491 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33642012 |
aatatatacacaatacatacctgaataccaaggtattggcaccaattatttgaaggaaacatggtctctaggggaggctttgtatcaaaggtggatttcc |
33641913 |
T |
|
| Q |
492 |
ttttctctaaatttgtttgatccttgaagaattcttcggtaaatggttcctcaaactttcttttc |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33641912 |
ttttctctaaatttgtttgatccttgaagaattcttcggtaaatggttcctcaaactttcttttc |
33641848 |
T |
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