View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_29 (Length: 550)
Name: NF0809_low_29
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 96 - 544
Target Start/End: Original strand, 27794131 - 27794579
Alignment:
| Q |
96 |
agatttgttctctcaaagtttgtttgatgatcatttgaagagaaaattgtgtgatgatcaagaggaccttttgcatagatcttatacctttctcgacgaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794131 |
agatttgttctctcaaagtttgtttgatgatcatttgaagagaaaattgtgtgatgatcaagaggaccttttgcatagatcttatacctttctcgacgaa |
27794230 |
T |
|
| Q |
196 |
tcctcgccatcatcacatgccaatgattctttacagcgttatcagtccgtccggggaagtgtcttgcaattaccgcccatctattaccatgaatccgatg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794231 |
tcctcgccatcatcacatgccaatgattctttacagcgttatcagtccgtccggggaagtgtcttgcaattaccgcccatctattaccatgaatccgatg |
27794330 |
T |
|
| Q |
296 |
agaagttataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccctaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794331 |
agaagttataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccctaat |
27794430 |
T |
|
| Q |
396 |
aaaattcatgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagataaccttataatgttggattaa |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27794431 |
aaaattcatgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagataaccttataatgttggattaa |
27794530 |
T |
|
| Q |
496 |
ataatgtttctcaagaaaatatctttcactatgctggattctccctatg |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27794531 |
ataatgtttctcaagaaaatatctttcactatgctggattctctctatg |
27794579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 392
Target Start/End: Original strand, 40751994 - 40752185
Alignment:
| Q |
201 |
gccatcatcacatgccaatgattctttacagcgttatcagtccgtccggggaagtgtcttgcaattaccgcccatctattaccatgaatccgatgagaag |
300 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||| | || ||||| ||||||| |||| |||||| | || || ||||||||||||| | |
|
|
| T |
40751994 |
gccattataacatgccaatgattcttcacagcattatcagttctaccagggaaaagtcttgctattagtgcccatttgtttccgtgaatccgatgagccg |
40752093 |
T |
|
| Q |
301 |
ttataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccct |
392 |
Q |
| |
|
| || | ||||||||| || || |||||||| ||||||| |||||||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
40752094 |
caagtagtctctcttcttcctcttctgtgaaaggtcttctgttaattcttggatctagctgattgaaccatctcaacctacaacttttccct |
40752185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 18245444 - 18245492
Alignment:
| Q |
337 |
ttctgtttattcttgggtccaattgattgaaccatctcaacctacaact |
385 |
Q |
| |
|
||||||| |||||||| |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
18245444 |
ttctgttgattcttggatccagttggttgaaccatctcagcctacaact |
18245492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4836 times since January 2019
Visitors: 5752