View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_31 (Length: 537)
Name: NF0809_low_31
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 64 - 295
Target Start/End: Complemental strand, 42808754 - 42808523
Alignment:
| Q |
64 |
gaaaaccggctgcaattaactgccagacaaacttcggcaattaactgtcaaggaaaccttaaaccacttatatttcaatttttacttcttttttctagtt |
163 |
Q |
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| T |
42808754 |
gaaaaccgactgcagttaactgccagacaaacttcagcaattaactgccgaggaaaccttaaaccactaatatttcaatttttacttcttttttctagtt |
42808655 |
T |
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| Q |
164 |
tgcagcaataaaacttgtgaccctcacattaattttctattaaatggatataattcacgttgaaaatgcaataatgtgcaatgatgatttccaannnnnn |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42808654 |
tgcagcaataaaacttgtgaccctcacattaattttctattaaatggatataattcacgttgaaaatgcaataatgtgcaatgatgatttccaatttttt |
42808555 |
T |
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| Q |
264 |
nggcacggttactatcactgtgttaagatatt |
295 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42808554 |
tggcacggttactatcactgtgttaagatatt |
42808523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 459
Target Start/End: Complemental strand, 42807936 - 42807854
Alignment:
| Q |
377 |
atttaagccactaccaaatcatgatattagagtgaaatatttgaattattatgttggtaaaatcaatgaggatcggtaagatc |
459 |
Q |
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| T |
42807936 |
atttaagccaccaccaaatcatgatattagagtgaaatatttgaattattatgttggtaaaatcaatgaggatcggtaagatc |
42807854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 377 - 459
Target Start/End: Complemental strand, 42765576 - 42765494
Alignment:
| Q |
377 |
atttaagccactaccaaatcatgatattagagtgaaatatttgaattattatgttggtaaaatcaatgaggatcggtaagatc |
459 |
Q |
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| T |
42765576 |
atttaagccaacaccaaatcatgatattagagtgaaatatttgaattattatattggtaaaatcaatgaggattggtaagatc |
42765494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 64 - 295
Target Start/End: Complemental strand, 33051704 - 33051471
Alignment:
| Q |
64 |
gaaaaccggctgcaattaactgcc--agacaaacttcggcaattaactgtcaaggaaaccttaaaccacttatatttcaatttttacttcttttttctag |
161 |
Q |
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|||||||||||||| ||||||||| ||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33051704 |
gaaaaccggctgcagttaactgccgaagaaaaacttcggcaattaactgccgaggaaaccttaaaccactaatatttcaatttttacttcttttttctag |
33051605 |
T |
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| Q |
162 |
tttgcagcaataaaacttgtgaccctcacattaattttctattaaatggatataattcacgttgaaaatgcaataatgtgcaatgatgatttccaannnn |
261 |
Q |
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| T |
33051604 |
tttgcagcaataaaacttgtgaccctcacattaattttctattaaatggatataattcacgttgaaaatgcattaatgtgcaatgattatttccaatttt |
33051505 |
T |
|
| Q |
262 |
nnnggcacggttactatcactgtgttaagatatt |
295 |
Q |
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| T |
33051504 |
tttggcacggttactatctctgtgttaagatatt |
33051471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 459
Target Start/End: Complemental strand, 33051173 - 33051091
Alignment:
| Q |
377 |
atttaagccactaccaaatcatgatattagagtgaaatatttgaattattatgttggtaaaatcaatgaggatcggtaagatc |
459 |
Q |
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| T |
33051173 |
atttaagccaccaccaaatcatgatattagagtgaaatatttgaattattatgttggtaaaatcaatgaggatcggtaagatc |
33051091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 35389433 - 35389384
Alignment:
| Q |
155 |
tttctagtttgcagcaataaaacttgtgaccctcacattaattttctatt |
204 |
Q |
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|||||||||||||||| ||||||| |||| ||||| |||||||||||||| |
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| T |
35389433 |
tttctagtttgcagcattaaaactggtgaacctcaaattaattttctatt |
35389384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 10492922 - 10492859
Alignment:
| Q |
66 |
aaaccggctgcaattaactgcc-agacaaacttcggcaattaactgtcaaggaaaccttaaacc |
128 |
Q |
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|||||||||||||||||||||| || ||||||||||| ||||||| | ||||||||| ||||| |
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| T |
10492922 |
aaaccggctgcaattaactgccgaggaaaacttcggcagttaactgccgaggaaacctcaaacc |
10492859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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