View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_33 (Length: 521)

Name: NF0809_low_33
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_33
NF0809_low_33
[»] chr4 (2 HSPs)
chr4 (2-512)||(10124260-10124773)
chr4 (145-511)||(28649862-28650229)
[»] chr3 (4 HSPs)
chr3 (97-508)||(25040650-25041061)
chr3 (98-511)||(25044385-25044798)
chr3 (117-507)||(25042801-25043190)
chr3 (372-469)||(54479360-54479457)
[»] chr2 (3 HSPs)
chr2 (97-508)||(21392781-21393192)
chr2 (122-511)||(21422111-21422509)
chr2 (372-475)||(1975176-1975279)
[»] chr1 (1 HSPs)
chr1 (117-511)||(24690576-24690970)
[»] chr7 (1 HSPs)
chr7 (432-505)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 2 - 512
Target Start/End: Complemental strand, 10124773 - 10124260
Alignment:
2 acaacaaccattgccactaaccttgaatattcctcaaccatcacatcctcc---accaccacctcaagatattgttgacaaccatgctcctgttcgctct 98  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||| ||||||||||||||||| |||    
10124773 acaacaaccattgccgttaaccttgaatattcctcaaccatcacatcctcctccaccaccacctcaagatgttgttgataaccatgctcctgttcgttct 10124674  T
99 cgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaa 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124673 cgccgacgaggtccgcctcgtaacggaccaatccctactccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaa 10124574  T
199 acagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctccca 298  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124573 acagaatctttaacatcaccggcgatgttaaatgcaagagttgtcaaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctccca 10124474  T
299 atatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgt 398  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124473 atatttagttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgt 10124374  T
399 gtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatt 498  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124373 gtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatt 10124274  T
499 tttgcaagtataat 512  Q
    ||||||||||||||    
10124273 tttgcaagtataat 10124260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 145 - 511
Target Start/End: Complemental strand, 28650229 - 28649862
Alignment:
145 tatgggccaccgaccgccgagcaaaaatt-cacagcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtc 243  Q
    ||||||| ||| |||| |||||||||| | |||| | | || |||||||| |||||   |||||||||||||| ||| || ||||| |||||||||||||    
28650229 tatgggcaacctaccgtcgagcaaaaaatgcacaacctcaatcatcttctacaaaatgaaatctttaacatcatgggtgacgttcaatgcaagagttgtc 28650130  T
244 taacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccaga 343  Q
     ||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||||| | | | |||| | || |||||||||||||||||||||      
28650129 aaacgaaattccaaatgtcgtttgattttgtggcgaaattcgatgcaatctctcaatattcgatcataaacatgaataccatgcatgatagggcaccatg 28650030  T
344 gactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttg 443  Q
    || ||||||| |||| ||||||   |   |||| || |||||||  ||||||  |||||||||| ||||||||||||||||||||||||| |||||||||    
28650029 gattttgatgaatcctagattgccaagaagtgttcaatgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttg 28649930  T
444 tttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 511  Q
    ||| ||||| | |||||||||||||||||||| || ||| |||||||||| |||||||||||||||||    
28649929 tttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaagtataa 28649862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 97 - 508
Target Start/End: Complemental strand, 25041061 - 25040650
Alignment:
97 ctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctcca 196  Q
    ||||| ||||||| || || |||| |||||  ||||| || || ||||||||||| ||||| |||||||||||||| |||||| | || |||||  | ||    
25041061 ctcgctgacgaggaccaccacgtagcggacagatccccatccctttcatatgggcaaccgatcgccgagcaaaaatccacagcctcaatcatctcttaca 25040962  T
197 aaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcc 296  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||   |||||||||||| ||||| ||||||||| ||| ||||||| ||| ||||||     
25040961 aaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttgttggtgaaattcaatgaaatctct 25040862  T
297 caatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaact 396  Q
    |||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| |||||| ||||   || ||| |||||||||||||||||||      
25040861 caatatttggttacaaacatgaacaccatgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaata 25040762  T
397 gtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaata 496  Q
    |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||| ||    
25040761 gtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagta 25040662  T
497 tttttgcaagta 508  Q
    ||||||||||||    
25040661 tttttgcaagta 25040650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 98 - 511
Target Start/End: Complemental strand, 25044798 - 25044385
Alignment:
98 tcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaa 197  Q
    ||||||||||||||  || ||||| |  ||||||||  | || ||| ||||||| ||||||||||||||||||||||||| | | |  |||||||| |||    
25044798 tcgccgacgaggtctaccacgtaatgatccaatcccagtccctttcgtatgggcaaccgaccgccgagcaaaaattcacaaccttagtcatcttctacaa 25044699  T
198 aacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctccc 297  Q
    ||  |||||||||||||||| || || ||||| ||||||||||| | |||||| || || ||||| || ||||||||||| ||||| ||||||||| | |    
25044698 aatggaatctttaacatcaccggtgaggttcaatgcaagagttgccaaacaaaatttcaaatgtccttcgatttggtggcaaaatttgatgtaatcgctc 25044599  T
298 aatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactg 397  Q
    | |||||||| |||||| | || |||||||||||||||||||| |  | ||||||| |||||||||||   |  ||||||||||||||  |||||||| |    
25044598 agtatttggtcacaaacatgaataccatgcatgatagggcaccgggaattttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacag 25044499  T
398 tgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatat 497  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |||||||| || ||| |||||||||| |||    
25044498 tgtgaagccgataattgccgagaagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtat 25044399  T
498 ttttgcaagtataa 511  Q
    ||||||||||||||    
25044398 ttttgcaagtataa 25044385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 117 - 507
Target Start/End: Complemental strand, 25043190 - 25042801
Alignment:
117 cgtaacggaccaatccctattccattcatat--gggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacat 214  Q
    |||||||||||||||||||| || |||||||  |||| ||| ||||||||| ||||||| | ||  | || ||||||||| ||||| ||||||||||  |    
25043190 cgtaacggaccaatccctatccctttcatatatgggctaccaaccgccgagaaaaaattgatagtctcaatcatcttctctaaaacggaatctttaatgt 25043091  T
215 cacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaac 314  Q
    |||   ||| |||||  |||||||||| | || ||||||| | ||| |||| ||||||||| ||||||| || |||||||  ||||||||||| ||||||    
25043090 cactatcgacgttcaacgcaagagttgccaaataaagttctaaatgacgttcgatttggtgacgaaatttgacgtaatctatcaatatttggtcacaaac 25042991  T
315 ttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattg 414  Q
     | |||||||| |||||||||||||||  |  ||||||||||||||||||| |||||||||||||||   ||| ||| |   ||||||| | |||| |||    
25042990 atgaacaccatacatgatagggcaccaacgcttttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttg 25042896  T
415 ctgagaagaaaaag--aatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagt 507  Q
    |  |||||||||||  |||||||| | | || |||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| |||||    
25042895 ccaagaagaaaaagataatatcaactagatgcttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt 25042801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 469
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
372 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg 469  Q
    |||||||| || |||||| ||||| |||||||||||||||||||||| ||||||  || |||||| ||| ||||||||||  ||||||||||||||||    
54479360 tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg 54479457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 97 - 508
Target Start/End: Original strand, 21392781 - 21393192
Alignment:
97 ctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctcca 196  Q
    ||||||||||| || | || |||| ||||||||| ||||| || ||||||||||| ||| | | |||||||||||| |||| | | || |||||  | ||    
21392781 ctcgccgacgaagtgcaccacgtagcggaccaattcctatccctttcatatgggcaaccaatcaccgagcaaaaatccacaacctcaatcatctcttaca 21392880  T
197 aaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcc 296  Q
    ||||| |||||||| |||||| ||||||||||| ||||||||||| | ||||||||| || ||| |||| ||| ||    |||||||||||||||||||     
21392881 aaacaaaatctttagcatcaccggcgatgttcaatgcaagagttgccaaacaaagtttcaaatgccgttcgatctgcgtacgaaattcgatgtaatctct 21392980  T
297 caatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaact 396  Q
    |||||||||||||| ||| | |||||||||||||||||||||||| |||  |||||| |||||||| ||   |  ||||  ||||||||||||||||||     
21392981 caatatttggttacgaacatgaacaccatgcatgatagggcaccaaagatcttgatgaatccaagactgccaagatgtgcacattgcaatcaagaaaaca 21393080  T
397 gtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaata 496  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||    
21393081 gtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttgaacaattgaagta 21393180  T
497 tttttgcaagta 508  Q
    ||||||||||||    
21393181 tttttgcaagta 21393192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 122 - 511
Target Start/End: Original strand, 21422111 - 21422509
Alignment:
122 cggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatcacgggc 221  Q
    |||||||||||||||| | ||||||||||  || || ||||| |||||||| |||||| | || |||||  | ||||||| ||||||||  ||||| ||     
21422111 cggaccaatccctattactttcatatgggaaactgatcgccgtgcaaaaatccacagcctaaatcatctcttacaaaacaaaatctttagtatcactggt 21422210  T
222 gatgt-----tcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 316  Q
    || ||     ||| ||||||||||| | |||||||||||| |||||||| ||||||   || ||||| ||||||||||| | |||||||||||||||| |    
21422211 gacgtgacgttcaatgcaagagttgccgaacaaagttccaaatgtcgttcgatttgcaagcaaaatttgatgtaatctctcgatatttggttacaaacat 21422310  T
317 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 416  Q
     |||| ||||||||||||||||||||||| ||||||| |||||| ||||   || |||||||||||||||||||||||| |||| |||||  ||||||||    
21422311 gaacaacatgcatgatagggcaccagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgct 21422410  T
417 gagaagaaaaagaatatcaattggttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 511  Q
    |||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
21422411 gagaagaaaaagaatatctattggttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataa 21422509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 475
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
372 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt 471  Q
    ||||| |||||||||||| ||||  ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
1975279 tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt 1975180  T
472 gttg 475  Q
    ||||    
1975179 gttg 1975176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 117 - 511
Target Start/End: Complemental strand, 24690970 - 24690576
Alignment:
117 cgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatca 216  Q
    |||| ||||||||||| ||| || | | ||||| | ||||||| ||||||||||||||||||| | || |||||  | ||||| | ||| ||||||||||    
24690970 cgtagcggaccaatccatataccttacttatggacaaccgaccaccgagcaaaaattcacagcctcaatcatctcttacaaaatacaatttttaacatca 24690871  T
217 cgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 316  Q
    |    || ||||| ||||||||||| | |||||||||| | || || ||||||||| |||  |||| ||| ||||| |||||||| ||||||||||||||    
24690870 ccaatgacgttcaatgcaagagttgacaaacaaagttctaaatatcttttgatttgttggaaaaatgcgacgtaatttcccaatagttggttacaaactt 24690771  T
317 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 416  Q
     |||||||||||||||||||||  | ||| ||||||| |||||||||||   || ||||| |||||||||||||||| |  ||||||||||||||||  |    
24690770 gaacaccatgcatgatagggcaagaaagattttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattatt 24690671  T
417 gagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 511  Q
    ||||||||||||||||||||||| ||||||||||| ||  |||||||| |||||||||| |||| |||| |||| |  |||||||||||||||||    
24690670 gagaagaaaaagaatatcaattgattgtttctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataa 24690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 505
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
432 atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa 505  Q
    ||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| |||||    
39600540 atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa 39600467  T

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