View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_38 (Length: 493)
Name: NF0809_low_38
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 35 - 464
Target Start/End: Original strand, 6290069 - 6290498
Alignment:
| Q |
35 |
atgaagtaaaaattgtgttattctattaagtttcttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacag |
134 |
Q |
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||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6290069 |
atgaagtaaaaattgtgttattcaattcagtttgttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacag |
6290168 |
T |
|
| Q |
135 |
ctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttctaccattcttaacaatcataacataca |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6290169 |
ctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgctcctcaagtaatcttccttcttcttccattcttaacaatcataacataca |
6290268 |
T |
|
| Q |
235 |
ctatacttttataaatatcaaggcgacattaattaagtcttattgaaatacactagggatcactttcgtttgtgaagtaataccttaaaaaataatatac |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6290269 |
ctatacttttataaatatcaaggcgacattaattaagtcttattgaaatacaccagggatcactttcgtttgtgaagtaataccttaaaaaataatatac |
6290368 |
T |
|
| Q |
335 |
ccaagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaa |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6290369 |
ccaagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaa |
6290468 |
T |
|
| Q |
435 |
gaatttgacgcgccaactgaggtttcgagt |
464 |
Q |
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|||||||||||||||| ||||||||||||| |
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| T |
6290469 |
gaatttgacgcgccaattgaggtttcgagt |
6290498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 6353512 - 6353590
Alignment:
| Q |
386 |
ctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaatttgacgcgccaactgaggtttcgagt |
464 |
Q |
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|
| T |
6353512 |
ctgccagttcttccccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagt |
6353590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 414
Target Start/End: Original strand, 6275619 - 6275696
Alignment:
| Q |
337 |
aagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg |
414 |
Q |
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| T |
6275619 |
aagtgtttaaataaaatataaaagcatataacctttcttagctggtttcctgccggttctccctcttcgagggtaagg |
6275696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 6322505 - 6322557
Alignment:
| Q |
362 |
ttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg |
414 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
6322505 |
ttataaccttttttagctggtttcctgccggttctgccccttcgagggtaagg |
6322557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 6425181 - 6425253
Alignment:
| Q |
365 |
taacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaa |
437 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| ||||||||||||||||| || |||||||||| ||||||| |
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| T |
6425181 |
taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaa |
6425253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 6333067 - 6333124
Alignment:
| Q |
357 |
aaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg |
414 |
Q |
| |
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||||||||| |||||| ||||| ||| |||||||||||| ||||||||||||||||| |
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|
| T |
6333067 |
aaagtttatcaccttttttagcatgtttcctgccggttctcccccttcgagggtaagg |
6333124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 7460563 - 7460612
Alignment:
| Q |
365 |
taacctttcttagctggttccctgccggttcttccccttcgagggtaagg |
414 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
7460563 |
taaccttttttagatggttttctgccggttcttccccttcgagggtaagg |
7460612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 4734115 - 4734034
Alignment:
| Q |
127 |
cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttct |
208 |
Q |
| |
|
|||||||| || |||||||||||| |||||| |||||||||| ||||||| |||||||||||| ||||||| |||||||| |
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| T |
4734115 |
cttaacagttgcacaagcttatgttgcaagtgagttagagttgtaagtggtagcttgttcctcatgtaatctctcttcttct |
4734034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 11021770 - 11021816
Alignment:
| Q |
175 |
ggttgcttgttcctcaagtaatcttccttcttctaccattcttaaca |
221 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
11021770 |
ggttacttgctcctcaagtaatcttccatcttcttccattcttaaca |
11021816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 14932079 - 14932175
Alignment:
| Q |
129 |
taacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagta--atcttc--cttcttctaccattcttaaca |
221 |
Q |
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|||||| |||||| |||||||||||||||||||| |||||| | | | ||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
14932079 |
taacagttgtacatgcttatgtggcaagttagttcgagttatgggagataacttgttcctcaagtaatatcttcttcttcttcttccattcttaaca |
14932175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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