View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_39 (Length: 492)
Name: NF0809_low_39
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 3 - 464
Target Start/End: Complemental strand, 38215350 - 38214889
Alignment:
| Q |
3 |
tcataggatcacaaggtggattaatgaagaggaagagagaattgaaggtgcagggaagacaagcttgcagtatgttataatggatatgactggtaagttc |
102 |
Q |
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| T |
38215350 |
tcataggatcacaaggtggattaatgaagaggaagagagaattgaaggtgcagggaagacaagcttgcagtatgttataatggatatgactggtaagttc |
38215251 |
T |
|
| Q |
103 |
ttgattaagatgtaattaattaacaatcaggttccaaagattcgaattccctgcaacagatgttttccgcattcacgcagtcaaaatatcggtggtcatt |
202 |
Q |
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| T |
38215250 |
ttgattaagatgtaattaattaacaatcaggttccaaagattcgaattccctgcaacagatattttcagcattcacgcagtcaaaatatcggtggtcatt |
38215151 |
T |
|
| Q |
203 |
tggtcaagattgaacaactcacattgaagtttgatattttgatcgaataatcacccacatctcaaatgcgttacattaggggatccaaattcaaagattt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38215150 |
tggtcaagattgaacaactcacattgaagtttgatattttgatcgaataatcaccaatatctcaaatgcgttacattttgggatccaaattcaaagattt |
38215051 |
T |
|
| Q |
303 |
ttggtctaacatgaaagttaattttattacagctgtagcaaacattgatacaagtggaataagcatgcttgaagagttcaagaagacagtcgacagaaaa |
402 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38215050 |
tcggtccaacatgaaagttaattttattacagctgtagcaaacattgatacaagtggaataagcatgcttgaagagttcaagaagacggtcgacagaaaa |
38214951 |
T |
|
| Q |
403 |
gggctacaagtaattattcaccgcatctcatctttacacaacaaatttaaatatcaaattat |
464 |
Q |
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| T |
38214950 |
gggctacaagtaattattcaccgcatctcatctttacacaacaaatttaaatatcaaattat |
38214889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 31750536 - 31750629
Alignment:
| Q |
3 |
tcataggatcacaaggtggattaatgaagaggaagagagaattgaaggtgcagggaagacaagcttgcagtatgttataatggatatgactggt |
96 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||| | ||||| |||||| ||| | ||||||||| ||||||||| |||| |
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| T |
31750536 |
tcataggatctcaaggtggatcgatgaagaggaagatagaattaaagatacaggggagacaattttgaattatgttatactggatatgagtggt |
31750629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 31750714 - 31750760
Alignment:
| Q |
332 |
cagctgtagcaaacattgatacaagtggaataagcatgcttgaagag |
378 |
Q |
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||||||| | ||| |||||||||||||||||||| |||||||||||| |
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| T |
31750714 |
cagctgttggaaatattgatacaagtggaataagtatgcttgaagag |
31750760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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