View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_4 (Length: 798)
Name: NF0809_low_4
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 83 - 386
Target Start/End: Complemental strand, 102556 - 102246
Alignment:
| Q |
83 |
cagagaagagaagtgcagtgatgatcgagcgaggatcggacagatagatagatag--------atagctgaaaggaaaggaaaggctttgtttgttaatt |
174 |
Q |
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| T |
102556 |
cagagaagagaagtgcagtgatgatcgagcgaggatcggacagatagatagatagatagatagatagctgaaaggaaaggaaaggctttgtttgttaatt |
102457 |
T |
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| Q |
175 |
ctcgaaaatggaaaagaaaaagtttctcgcactagcagcagcaatcgcaccaaacccacccactcttctcttctttctaacctttgtgttgtgttttgaa |
274 |
Q |
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| T |
102456 |
ctcgaaaatggaaaagaaaaagtttctcgcactagcagcagcaatcgcaccaaacccacccactcttctcttctttctaacctttgtgttgtgttttgaa |
102357 |
T |
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| Q |
275 |
gtgtgtatgcaatggacgctcaagatcgatcgatccaactcaacaatgggactcaccactttcctttgccgtcattccattccatttctcagctattgtg |
374 |
Q |
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| T |
102356 |
gtgtgtatacaatggacgctcaagatcgatcgatccaactcaacaatgggactcaccactttcctttgccgtcatt-cattccatttctcagctattgtg |
102258 |
T |
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| Q |
375 |
agttgtgacgac |
386 |
Q |
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| T |
102257 |
agttgtgacgac |
102246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 487 - 769
Target Start/End: Complemental strand, 102149 - 101881
Alignment:
| Q |
487 |
acttcatttattattaattagttgttcaaacctcaaacaacacacaacacccacctgccaaaataccagctcaccctcaaaccaaacaatcatcattatt |
586 |
Q |
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| T |
102149 |
actttatttattattaattagttgttcagacctcaaacaacacacagcacctacctgccaaaataccagctcaccctcaaaccaaacaattatcattatt |
102050 |
T |
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| Q |
587 |
atccatcaatcatacatatataaatggtgaatcaagtgattcgattcatcattatactaataatacaatattggaatctttttatnnnnnnnnnnnnnnt |
686 |
Q |
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| T |
102049 |
atccatcaatcatacatatataaatggtgaatcaagtgattcgattcatcattatactaataatacaatattggaatctttttataaaaaaataaaaaat |
101950 |
T |
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| Q |
687 |
agacactcaaaaataatctatcactaaagagaatgttatgataaatgtgataagttggtgatgtgatagaaaaatgaagtgtt |
769 |
Q |
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| T |
101949 |
agacactcaaaaataatctat--------------ttatgataaatgtgataagttggtgatgtgatagaaaaatgaagtgtt |
101881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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