View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_40 (Length: 490)
Name: NF0809_low_40
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Complemental strand, 38609548 - 38609099
Alignment:
| Q |
13 |
aatatcgtatgtaacttgtttgtcatattaccttttttacatttatgaatgcactaatcatgtctcacagggcccaaaaatacatgcggagatccacaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609548 |
aatatcgtatgtaacttgtttgtcactataccttttttacatttatgaatgcactaatcatgtctcacagggcccaaaaatacatgcggagatccacaaa |
38609449 |
T |
|
| Q |
113 |
aatgggcatgggcttggtcaggtgagtcgtggaggatcctctgctacttcaannnnnnnnnnattattgt-aaccgtgcctatgatatctctctatcgtc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38609448 |
aatgggcatgggcttggtcaggtgagtcatggaggatcatctgctacttcaattttttttttattattgtcaaccgtgcctatgatatctctctatcgtc |
38609349 |
T |
|
| Q |
212 |
tctttgtaaagcttgtttgcattgtgtttattgcaaatataagttctatgatatctctctaccgtctctttgtaaagcttgtttgcattgtgtttattgc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609348 |
tctttgtaaagcttgtttgcattgtgtttattgcaaatataagttctatgatatctctctatcgtctctttgtaaagcttgtttgcattgtgtttattgc |
38609249 |
T |
|
| Q |
312 |
aaatataagttaatttcttcaaaatttgtatttaaacaacatgtttcgaaggaataaaatgatgttaggttattgtgtcgtcagtttatcaagttatatg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609248 |
aaatataagttaatttcttcaaaatttgtatttaaacaacatgttccgaaggaataaaatgatgttaggttattgtgtcgtcagtttatcaagttatatg |
38609149 |
T |
|
| Q |
412 |
aggcacattgctctttgtttgtgtgtcatatattattcgtaggttcaggt |
461 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38609148 |
agtcacattgctctttgtttgtgtgtcatatattatttgtaggttcaggt |
38609099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 408
Target Start/End: Complemental strand, 38604267 - 38604116
Alignment:
| Q |
257 |
ctatgatatctctctaccgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataagttaatttcttcaaaatttgtatttaaacaacatgtt |
356 |
Q |
| |
|
||||||| |||||||| | ||||| ||| || |||||||||||| |||| |||||| |||||| ||||||||||||||| | ||| ||| |||||||||| |
|
|
| T |
38604267 |
ctatgatgtctctctatcctctctctgtgaaacttgtttgcattttgttaattgcagatataatttaatttcttcaaaactagtaattagacaacatgtt |
38604168 |
T |
|
| Q |
357 |
tcgaaggaataaaatgatgttaggttattgtgtcgtcagtttatcaagttat |
408 |
Q |
| |
|
| ||| |||||||||| |||||| ||||| | |||| ||||||| ||||| |
|
|
| T |
38604167 |
ttagagggataaaatgatcttaggtcattgtattgtcaatttatcatgttat |
38604116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 38604270 - 38604205
Alignment:
| Q |
188 |
tgcctatgatatctctctatcgtctctttgtaaagcttgtttgcattgtgtttattgcaaatataa |
253 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||| || |||||||||||| |||| |||||| |||||| |
|
|
| T |
38604270 |
tgcctatgatgtctctctatcctctctctgtgaaacttgtttgcattttgttaattgcagatataa |
38604205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5628 times since January 2019
Visitors: 5758