View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_42 (Length: 487)
Name: NF0809_low_42
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 36397663 - 36397182
Alignment:
| Q |
1 |
caagtatgattgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacatcaggagacttttcatagtgaattgcattatgaattaa |
100 |
Q |
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| T |
36397663 |
caagtatggttgatgccagtgtaatcacggtaccaatattattgcaacggcagtgttatacagcaggagagttttcatagtgaattgcattatgaattaa |
36397564 |
T |
|
| Q |
101 |
tcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatataattgtgatcaaactttcaccatgtaacgataaaaagcctacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397563 |
tcgttgttgaccaatacactcacgctcttattgaaaaacaccgtggttatgggatgtaattgtgatcaaactttcaccatgtaacgataaaaagcctacg |
36397464 |
T |
|
| Q |
201 |
tgatcacgtagtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaatatcttga--ctgtgattgcaattgattgcggaca |
298 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36397463 |
tgatcacgtcgtgaattttgttttcgttatcttaaacattaccattgttgtataaaccccaaaaatatcttgactctgtgattgcaattgattgcggaca |
36397364 |
T |
|
| Q |
299 |
tcaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatctggattgtgtag |
398 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36397363 |
tgaatttaaaacataagcattctttatattgaatgtagtgtgacttgtaaaggacaaaaatagaattataaacactaaacagacaatttggattgtgtag |
36397264 |
T |
|
| Q |
399 |
tgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatatattcttcg |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36397263 |
tgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttctgatattttcttcg |
36397182 |
T |
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