View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_43 (Length: 480)
Name: NF0809_low_43
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 30 - 469
Target Start/End: Complemental strand, 4048900 - 4048461
Alignment:
| Q |
30 |
gtatctccatttatatttatgctaggtttgtgtttgctcatctagaggtagattcatccaatgattttccatgcaaatccaaatgatgttcgaggaattt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
4048900 |
gtatctccatttatatttatgctaggtttgtgtttgctcatctagaggtagattcatccaatgattttccctgcaaatccaaatgatgttcaaggaattt |
4048801 |
T |
|
| Q |
130 |
ccatgcctctgtagagagagatcctgcacagaaaccaagacaaattcatcctatatttgacacattcagaaaggaacacagaagagcgataatggcaaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4048800 |
ccatgcctctgtagagagagatcctgcacagaaaccaagacaaattcatcctatatttgacacattcagaaaggaacacagaagagcgataatggcaaca |
4048701 |
T |
|
| Q |
230 |
ctcgagaatttagttgagcatagcaaaagtctgcctagttctgttggaaacactacagcgccatctttttgtagatttttgttgagtatgactcatagtt |
329 |
Q |
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| T |
4048700 |
ctcgagaatttagttgagcatagcaaaagtctgcctagttctgttggagacactacaacgccatctttttgtagatttttgttgagtatgactcataatt |
4048601 |
T |
|
| Q |
330 |
tattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagttttataaatacaaaggtactgtagtcgctctac |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4048600 |
tattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagttttataaatacaaaggtactgtagtcgctctac |
4048501 |
T |
|
| Q |
430 |
agtcggagaggtatgcacaatccactgaagtttgattcat |
469 |
Q |
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| T |
4048500 |
agtcggagaggtatgcacaatccactgaagtttgattcat |
4048461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 4151964 - 4152046
Alignment:
| Q |
316 |
tatgactcatagtttattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagttt |
398 |
Q |
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| T |
4151964 |
tatgactcatggtttaatgataagtgcgcaggtggctcgagttgagccgctctgataaactgtactttgtaaaacttaagttt |
4152046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 7487896 - 7487836
Alignment:
| Q |
38 |
atttatatttatgctaggtttgtgtttgctcatctagaggtagattcatccaatgattttc |
98 |
Q |
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| T |
7487896 |
atttatttttatgttaggtttgtatttgctcaactagaggtagattcgtcctatgattttc |
7487836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 30 - 469
Target Start/End: Original strand, 13939390 - 13939829
Alignment:
| Q |
30 |
gtatctccatttatatttatgctaggtttgtgtttgctcatctagaggtagattcatccaatgattttccatgcaaatccaaatgatgttcgaggaattt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
13939390 |
gtatctccatttatatttatgctaggtttgtgtttgctcatctagaggtagattcatccaatgattttccctgcaaatccaaatgatgttctaggaattt |
13939489 |
T |
|
| Q |
130 |
ccatgcctctgtagagagagatcctgcacagaaaccaagacaaattcatcctatatttgacacattcagaaaggaacacagaagagcgataatggcaaca |
229 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13939490 |
ccatgcctctgtagagagagatccttcacagaaaccaagacaaattcatcctatatttgacacattcagaaaggaacacagaagagcgataatggcaaca |
13939589 |
T |
|
| Q |
230 |
ctcgagaatttagttgagcatagcaaaagtctgcctagttctgttggaaacactacagcgccatctttttgtagatttttgttgagtatgactcatagtt |
329 |
Q |
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| T |
13939590 |
cttgacaatttagttgagcatagcaaaagtctgcctagttctgttggagacactacagtgccatctttttgtagatttttgttgagtatgactcatagtt |
13939689 |
T |
|
| Q |
330 |
tattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctgcaaaccctaagttttataaatacaaaggtactgtagtcgctctac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13939690 |
tattgataagtgggcaagtcgctcgagttgagccgctctgataaattgtactctacaaaccctaagttttataaatacaaaggtactgtagtcgctctac |
13939789 |
T |
|
| Q |
430 |
agtcggagaggtatgcacaatccactgaagtttgattcat |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13939790 |
agtcggagaggtatgcacaatccactgaagtttgattcat |
13939829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 38779407 - 38779439
Alignment:
| Q |
316 |
tatgactcatagtttattgataagtgggcaagt |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38779407 |
tatgactcatagtttattgataagtgggcaagt |
38779439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 38270188 - 38270137
Alignment:
| Q |
304 |
atttttgttgagtatgactcatagtttattgataagtgggcaagtcgctcga |
355 |
Q |
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|||| ||| ||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
38270188 |
atttctgtagagtatgactcatagtttactgataattgggcaggtcgctcga |
38270137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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