View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_47 (Length: 467)
Name: NF0809_low_47
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 22612567 - 22612846
Alignment:
| Q |
15 |
tatcaacaaaatcattgaaaggtatcggcaatgtcgttacagcaagccacaagctggaaattcattaggacataatgaatcacaggtttttcaatttttc |
114 |
Q |
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| T |
22612567 |
tatcaacaaaatcattgaaaggtatcggcaatgtcgttacagcaagccacaagctggaaattcattaggacataatgaatcacaggtttttcaatttttc |
22612666 |
T |
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| Q |
115 |
ccttcttgactatattatcttttatcctt----nnnnnnnnngactatattaacttttaaaaataagatgactattttaactaatttattgtgccttgca |
210 |
Q |
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| T |
22612667 |
ccttcttgactatattatcttttatccttaaaaaaaaaaaaagacaatattaacttttaaaaataagataactattttaactaatttattgtgccttgca |
22612766 |
T |
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| Q |
211 |
gaatttataccaggactatttaaaattaaaggcaaaatatgagtctcttgaccgcaagcagaggtaactaatcaaatata |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
22612767 |
gaatttataccaggactatttaaaattaaaggcaaaatatgagtctcttgaccgtaagcagaggtaaataatcaaatata |
22612846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 22613258 - 22613344
Alignment:
| Q |
352 |
tttatcttagaaaaagtggtcactacaatttctctttaattgaaaataagggcaaaagtattgattagatatcctttgtgtagttac |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22613258 |
tttatcttagaaaaagtggtcactacaatttctctttaattgaaaataagggcaaaagtattaattagatatcctttgtgtagttac |
22613344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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