View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_49 (Length: 466)

Name: NF0809_low_49
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_49
NF0809_low_49
[»] chr5 (5 HSPs)
chr5 (41-249)||(2159840-2160048)
chr5 (41-197)||(3136697-3136853)
chr5 (41-198)||(41636249-41636406)
chr5 (41-177)||(24528139-24528275)
chr5 (10-43)||(41636127-41636160)
[»] chr1 (3 HSPs)
chr1 (10-197)||(14941359-14941546)
chr1 (10-197)||(14951366-14951553)
chr1 (10-197)||(14955607-14955794)
[»] chr2 (3 HSPs)
chr2 (41-197)||(10742674-10742830)
chr2 (41-198)||(41576956-41577115)
chr2 (41-198)||(4042324-4042481)
[»] chr6 (4 HSPs)
chr6 (41-199)||(15326832-15326990)
chr6 (41-168)||(17142230-17142357)
chr6 (41-129)||(15065803-15065891)
chr6 (135-175)||(15071250-15071290)
[»] chr7 (1 HSPs)
chr7 (41-197)||(41232406-41232562)
[»] chr3 (2 HSPs)
chr3 (41-197)||(23565653-23565809)
chr3 (10-43)||(23565531-23565564)
[»] chr8 (3 HSPs)
chr8 (41-200)||(35865410-35865568)
chr8 (41-168)||(41448793-41448920)
chr8 (58-198)||(41826913-41827059)
[»] chr4 (1 HSPs)
chr4 (114-197)||(3231723-3231806)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 2160048 - 2159840
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
2160048 tttaatatctattgcatattgtatgtttatctactttgttgttttaatcattatataaacttgaattttggtgtcattatttattttgttttatttaaat 2159949  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagtataacatcaaattaagacattccctccaaattaaacacgtcaa 240  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
2159948 tacattattcaataatagatacattaacccgtgcgtacgcacgggtatcacactagtataacgtcaaattaagacattccctccaaattaaacacgtcaa 2159849  T
241 gtaaattta 249  Q
    |||||||||    
2159848 gtaaattta 2159840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 3136853 - 3136697
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
3136853 tttaatatctattgcatgttgtatgtttatctactttgttgttttaacgattatatcaacttaaattttggtgtcattatttattttgttttatttaaat 3136754  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
3136753 tacattgttcaataatagatacattaacccatgcgtacgcacgggtatcacactagt 3136697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 41636249 - 41636406
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||  |||||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
41636249 tttaatatctattgtatgttgtatatttatctactttgttgttttaatgattatatcaacttaaattttagtgtcattatttattttgttttatttaaat 41636348  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagta 198  Q
    | ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
41636349 ttcattgttcaataatatatacattaaccggtgcgtacgcacgggtatcacacgagta 41636406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 24528275 - 24528139
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||     
24528275 tttaatatctattgcatgttgtatgtttatctactttgttgttttaatcattatatcaacttgaattttagtgtcattatttattttgttttatttaaac 24528176  T
141 tacattgttcaataatagatacattaacccgtgcgta 177  Q
    ||||||||||||||| |||||||||||||||||||||    
24528175 tacattgttcaataacagatacattaacccgtgcgta 24528139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 41636127 - 41636160
Alignment:
10 agaagaaattgagtatggatgttatactaatttt 43  Q
    ||||||||||||||||||||||||||||||||||    
41636127 agaagaaattgagtatggatgttatactaatttt 41636160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 14941359 - 14941546
Alignment:
10 agaagaaattgagtatggatgttatactaattttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaatttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
14941359 agaagaaattgagtatgggtgttatactaattttaatatctattacatgttgtatgtttatctactttattgttttaacgattatatcaacttgaatttt 14941458  T
110 agtgtcattatttattttgttttatttaaattacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
      |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||    
14941459 gatgtcattatttattttattttatttaaattacattgttcaataatagatacattaacccgtgctaaagcatgggtatcacactagt 14941546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 14951366 - 14951553
Alignment:
10 agaagaaattgagtatggatgttatactaattttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaatttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
14951366 agaagaaattgagtatgggtgttatactaattttaatatctattacatgttgtatgtttatctactttattgttttaacgattatatcaacttgaatttt 14951465  T
110 agtgtcattatttattttgttttatttaaattacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
      |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||    
14951466 gatgtcattatttattttattttatttaaattacattgttcaataatagatacattaacccgtgctaaagcatgggtatcacactagt 14951553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 14955607 - 14955794
Alignment:
10 agaagaaattgagtatggatgttatactaattttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaatttt 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
14955607 agaagaaattgagtatgggtgttatactaattttaatatctattacatgttgtatgtttatctactttattgttttaacgattatatcaacttgaatttt 14955706  T
110 agtgtcattatttattttgttttatttaaattacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
      |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||    
14955707 gatgtcattatttattttattttatttaaattacattgttcaataatagatacattaacccgtgctaaagcatgggtatcacactagt 14955794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 10742830 - 10742674
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
10742830 tttaatatctattgcatgttgtatgtttatctactttgttgttttaacgattatatcaacttaaattttgatgtcattatttattttgttttatttaaat 10742731  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10742730 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 10742674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 41577115 - 41576956
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
41577115 tttaatatctattgcatgttgtatgtttatctactttgttgttttaatgattatatcaacttaaattttagtgtcattatttattttgttttacttaaat 41577016  T
141 tacattgttcaata--atagatacattaacccgtgcgtacgcacgggtatcacactagta 198  Q
    |||||| |||||||  ||| |||||||||||||||||||||||| |||||||||||||||    
41577015 tacattattcaataatatatatacattaacccgtgcgtacgcacaggtatcacactagta 41576956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 4042324 - 4042481
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    |||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
4042324 tttaatatctatcgcatgttgtatgtttatttactttgttgttttaacgattatatcaacttgaattttgatgtcattatttattttgttttatataaat 4042423  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagta 198  Q
    |||||| |||||||||||||||||||||||||  |||||||||| |||||||||||||    
4042424 tacattattcaataatagatacattaacccgtatgtacgcacggatatcacactagta 4042481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 15326832 - 15326990
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
15326832 tttaatatctattgcatgttgtatgtttatctactttgttgttttaacgattatatcaacttaaattttgatgtcattatttattttgttttatttaaat 15326931  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagtat 199  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
15326932 tacattgttcaataatagatacattaatccgtgcgtacgcacgggtatcacgctagtat 15326990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 17142230 - 17142357
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    |||||| |||||||  |||| | |||||||||||||| || ||||||| ||||||||||||||||||||  | |||||||||||||||||||||||||||    
17142230 tttaatgtctattgtatgttatatgtttatctactttattattttaaccattatatcaacttgaattttgatatcattatttattttgttttatttaaat 17142329  T
141 tacattgttcaataatagatacattaac 168  Q
    ||||||||||||||||||||||||||||    
17142330 tacattgttcaataatagatacattaac 17142357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 15065803 - 15065891
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgt 129  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
15065803 tttaatatctattgcatgttgtatgtttatctactttgttgttttaatgattatatcaacttaaattttaatgtcattatttattttgt 15065891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 15071250 - 15071290
Alignment:
135 ttaaattacattgttcaataatagatacattaacccgtgcg 175  Q
    |||||||||||  |||||||||| |||||||||||||||||    
15071250 ttaaattacatcattcaataatatatacattaacccgtgcg 15071290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 41232562 - 41232406
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    |||||| |||||||  |||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||    
41232562 tttaatgtctattgtatgttgtatgtttatctactttattgttttaaccattatatcaacttgaattttggtgtcattatttattttgttttattttaat 41232463  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41232462 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 41232406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 23565653 - 23565809
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
23565653 tttaatatctattgcatgttgtatgtttatctactttgttgttttaatgattatatcaacttaaattttagtatcattatttattttgttttatttaaat 23565752  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
23565753 tacattgttcaataatatatacattaacccgtgtgtgcgcacgggtatcacactagt 23565809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 23565531 - 23565564
Alignment:
10 agaagaaattgagtatggatgttatactaatttt 43  Q
    ||||||||||||||||||||||||||||||||||    
23565531 agaagaaattgagtatggatgttatactaatttt 23565564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 35865568 - 35865410
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    |||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
35865568 tttaatatctat-gcatgttatatgtttatctactttgttgttttaacgattatatcaacttgaattttgatgtcattatttattttattttatttaaat 35865470  T
141 tacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagtata 200  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
35865469 tacattgttcaataatagatacattaactcttgcgtacgcacgggtatcacactagtata 35865410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 41448920 - 41448793
Alignment:
41 tttaatatctattgcttgttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaat 140  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||    
41448920 tttaatatctattgcatgttgtatgtttatctactttgttgttttaacaattatatcaacttgaatttcggtgtcattatttattttgttttatttatat 41448821  T
141 tacattgttcaataatagatacattaac 168  Q
    |||||||||||||||||||| |||||||    
41448820 tacattgttcaataatagatgcattaac 41448793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 41827059 - 41826913
Alignment:
58 gttgtttgtttatctactttgttgttttaacgattatatcaacttgaattttagtgtcattatttattttgttttatttaaattacattgttcaataata 157  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
41827059 gttgtatgtttatctactttattgttttaaccattatatcaacttgaattttggtgtcattatttattttgttttatttaaattacatcgttcaataata 41826960  T
158 gatacattaacc------cgtgcgtacgcacgggtatcacactagta 198  Q
    |||| |||| ||      |||||||||||||||||||||||||||||    
41826959 gatatattagcccgtgctcgtgcgtacgcacgggtatcacactagta 41826913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 3231723 - 3231806
Alignment:
114 tcattatttattttgttttatttaaattacattgttcaataatagatacattaacccgtgcgtacgcacgggtatcacactagt 197  Q
    ||||| |||||| | | ||||| |||||||||||||  |||  |||||||| |||| |||||||||||||||| ||||||||||    
3231723 tcattgtttattatatgttattcaaattacattgtttgatagcagatacatcaacctgtgcgtacgcacgggtgtcacactagt 3231806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5690 times since January 2019
Visitors: 5758