View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_5 (Length: 768)
Name: NF0809_low_5
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 256 - 589
Target Start/End: Original strand, 3920869 - 3921182
Alignment:
| Q |
256 |
tatcatcatagctactatgacatatttccattgtatttatagtttgaatgatcaaag-atgattggatgataaaagatcatgaattctaagttctagtca |
354 |
Q |
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| T |
3920869 |
tatcatcatagctactatgacatatttccgttgtatttatagtttgaatgatcaaaggatgattggatgataaaagatcatgaattctaagttctagtca |
3920968 |
T |
|
| Q |
355 |
attcactaagcgagttgagagcgagctaaagtgagttggaagcgaatcaaatgagaaagttgaaggtattctataagagcaaattcgttaaagagaacaa |
454 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
3920969 |
attcactaagcgagttgagagcgagccaaagtgagttggaagcgaatcaaatgagaaagttgaaggtattctatga-----------------agaa--- |
3921048 |
T |
|
| Q |
455 |
caattcgcttagaaaattaagacatctttagtgatctcggggatgagctaacattacctttctatgaagaaacatcaatttactaagtgagcctctcatt |
554 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3921049 |
-aattcgcttagaaaattaagacatctttagtgatttcggggatgagctaacattacctttctatgaagaaacgtcaatttactaagtgagcctctcatt |
3921147 |
T |
|
| Q |
555 |
ttcttagcgaattttcactttcctgatttgtgtaa |
589 |
Q |
| |
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||||||||||||||||||| ||| |||||||||| |
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| T |
3921148 |
ctcttagcgaattttcacttcccttatttgtgtaa |
3921182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 627 - 768
Target Start/End: Original strand, 3921421 - 3921562
Alignment:
| Q |
627 |
aacattttttgggttctaaactagagagcgaccatgcgagagaagaaacaagtttgaagaaacttcagggatcaacatccattatcattccatctcttct |
726 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3921421 |
aacattttttgggttctaaactagagagcgaccatgggagagaagaaacaagtttgaagaaacttcagggatcaacatcaattatcattccatctcttct |
3921520 |
T |
|
| Q |
727 |
tgatatgtattataaggctaatatacttaattagctaatttt |
768 |
Q |
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| T |
3921521 |
tgatatgtattataaggctaatatgcttaattagctaatttt |
3921562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3920803 - 3920873
Alignment:
| Q |
1 |
tgatctatattataatatctttcaatcaaacggttgattttgtaatacggttgtctggtaaggaatcatca |
71 |
Q |
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| T |
3920803 |
tgatctatattataatatctttcaatcaaatggttgattttgtaatacggttgtctggtaaggaattatca |
3920873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 629 - 742
Target Start/End: Original strand, 36943831 - 36943944
Alignment:
| Q |
629 |
cattttttgggttctaaactagagagcgaccatgcgagagaagaaacaagtttgaagaaacttcagggatcaacatccattatcattccatctcttcttg |
728 |
Q |
| |
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|||||| | |||||| ||| ||||||||||||| | ||||||| | |||| |||||||| ||||||||||||| ||||||||| |||||||| ||| |
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| T |
36943831 |
cattttctaggttctgaaccagagagcgaccatagaaaagaagaagtacgttttgagaaacttgagggatcaacatcaattatcatttcatctcttattg |
36943930 |
T |
|
| Q |
729 |
atatgtattataag |
742 |
Q |
| |
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||||||| ||||| |
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| T |
36943931 |
ttatgtatcataag |
36943944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 3921366 - 3921402
Alignment:
| Q |
581 |
tttgtgtaaatagcaacctagatcacaaaataaggga |
617 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3921366 |
tttgtgtaaatagcaacctagatcacaaaataaggga |
3921402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43263879 - 43263929
Alignment:
| Q |
1 |
tgatctatattataatatctttcaatcaaacggttgattttgtaatacggtt |
52 |
Q |
| |
|
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| T |
43263879 |
tgatctatattataatatgtttcaatcaaacgg-tgattttgtaaaacggtt |
43263929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21708332 - 21708295
Alignment:
| Q |
17 |
atctttcaatcaaacggttgattttgtaatacggttgt |
54 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| |
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| T |
21708332 |
atctttcaatccaacgattgattttgtaatacggttgt |
21708295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27823263 - 27823308
Alignment:
| Q |
1 |
tgatctatattataatatctttcaatcaaacggttgattttgtaat |
46 |
Q |
| |
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|||||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
27823263 |
tgatctatgttataatatctttcaatccaacggtcgattttgtaat |
27823308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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