View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_56 (Length: 442)
Name: NF0809_low_56
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 27172066 - 27172411
Alignment:
| Q |
30 |
tgcacttcatccaattggagatgaggggaatgccataggacctctttcactacagaggccctaggtagatggatatcattttgcttattttatgtttctc |
129 |
Q |
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| T |
27172066 |
tgcacttcatccaattggagatgaggggaatgccataggacctctttcactacagaggccctagggagatggatatcattttgcttattttatgtctctc |
27172165 |
T |
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| Q |
130 |
acatgtttctctaagaaccttcagagaaatattcatgnnnnnnnggctcaattgtgtgtagattatctgaaaagatagaagcaggagaattttttagcac |
229 |
Q |
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| T |
27172166 |
acatgtttctctaagaaccttcagagaaatattcatgtttttttggctcaattgtgtgtagattatctgaagagatagaagcaggagaattttttagcac |
27172265 |
T |
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| Q |
230 |
aaagaagaaaacatgcaaatattatgtgataaaattaagcttcaattattttggtggttaaaagcggcatatccaacttttgatttcgactatcacaatt |
329 |
Q |
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| T |
27172266 |
aaagaagaaaacatgcaaatattatgtgataaaattaagcttcaattattttggtggttaaaagcggcatatccaacttttgatttcgactatcacaatt |
27172365 |
T |
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| Q |
330 |
gatgagttaatcctctttggtgccttgcttctttttcttaggcgaa |
375 |
Q |
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| T |
27172366 |
gatgagttaatcctcttcactgccttgcttctttttcttaggcgaa |
27172411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 104 - 310
Target Start/End: Original strand, 27163218 - 27163423
Alignment:
| Q |
104 |
atcattttgcttattttatgtttctcacatgtttctctaagaaccttcagagaaatattcatgnnnnnnn-ggctcaattgtgtgtagattatctgaaaa |
202 |
Q |
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| T |
27163218 |
atcattttgctcattttatct--ctcacaagtttctctaagaatcttcagagagatattcttgttttttttggctcagttgtgtgtagattatctgaaaa |
27163315 |
T |
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| Q |
203 |
gatagaagcaggagaattttttagcacaaagaagaaaacatgcaaatattatgtgataaaattaagcttcaattattttggtggttaaaagcggcatatc |
302 |
Q |
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| T |
27163316 |
gatattaacatgagaatttttcagcacaaaaaggaaaatagacaaatattatgtgataaaattaagcttaaattattttgatggttaaaagcggcatata |
27163415 |
T |
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| Q |
303 |
caactttt |
310 |
Q |
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| T |
27163416 |
caactttt |
27163423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 181 - 346
Target Start/End: Original strand, 48706276 - 48706441
Alignment:
| Q |
181 |
ttgtgtgtagattatctgaaaagatagaagcaggagaattttttagcacaaagaagaaaacatgcaaatattatgtgataaaattaagcttcaattattt |
280 |
Q |
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| T |
48706276 |
ttgtgtgtggattatctgaaaagaaagaaacaagcgaattttttatcgcaaagaggaaaacatgcaaatcttatgtgataaagtttaggttgatttattt |
48706375 |
T |
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| Q |
281 |
tggtggttaaaagcggcatatccaacttttgatttcgactatcacaattgatgagttaatcctctt |
346 |
Q |
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| T |
48706376 |
tggtggttaaaagtggcttatccatcgtttgatttagattatcacaattggtggtttaatcctctt |
48706441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 369
Target Start/End: Original strand, 12653552 - 12653661
Alignment:
| Q |
259 |
taaaattaagcttcaattattttggtggttaaaagcggcatatccaacttttgatttcgactatcacaattgatgagttaatcctctttggtgccttgct |
358 |
Q |
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| T |
12653552 |
taaaattaaacttcaatcgttttggtggttaaaaagggaatatccatcttttga-ttagaccatcacaatcggtggcttaatcctcttaagtgccttgtt |
12653650 |
T |
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| Q |
359 |
tctttttctta |
369 |
Q |
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| T |
12653651 |
tatgtttctta |
12653661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 41025314 - 41025396
Alignment:
| Q |
245 |
caaatattatgtgataaaattaagcttcaattattttggtggttaaaagcggcatatccaacttttgatttcgactatcacaa |
327 |
Q |
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||||| ||||||||||||||||||||| | | ||||||||||| |||| |||||| ||| ||||| ||||| |||||||||| |
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| T |
41025314 |
caaattttatgtgataaaattaagcttaagtcgttttggtggttgaaagtggcatacccatctttttatttcaactatcacaa |
41025396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 35890030 - 35890116
Alignment:
| Q |
239 |
aacatgcaaatattatgtgataaaattaagcttcaattattttggtggttaaaagcggcatatccaacttttgatttcgactatcac |
325 |
Q |
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|||||| ||||||||||||||||| | ||| |||| | ||||||||||| |||||||||||||| || | || |||||||||||| |
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| T |
35890030 |
aacatggaaatattatgtgataaagtcaagtttcagtctttttggtggttgaaagcggcatatcctacactcgagttcgactatcac |
35890116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 3967241 - 3967279
Alignment:
| Q |
305 |
acttttgatttcgactatcacaattgatgagttaatcct |
343 |
Q |
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| T |
3967241 |
acttttggtttcgattatcacaattgatgagttaatcct |
3967279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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