View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_58 (Length: 437)
Name: NF0809_low_58
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 2136399 - 2136000
Alignment:
| Q |
30 |
cttcctaactctttaaattcccactttatcatcattcacacacataacacnnnnnnnnnnnnnnnctagtacactacactaaactctactagttctcaag |
129 |
Q |
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| T |
2136399 |
cttcctaactctttaaattcccactttatcatcattcacacacataacacaaaaaagtgaaaaaactagtacactacactaaactctactagttctcaag |
2136300 |
T |
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| Q |
130 |
ttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagtagctgctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136299 |
ttctcttacatggatcctttcaaagaaaaagtaaagtgtgtatggattcatggacctatcatagtaggtgctggtccttcaggtatagcagtagctgctt |
2136200 |
T |
|
| Q |
230 |
gtttatcagaacaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcattt |
329 |
Q |
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| T |
2136199 |
gtttatcagagcaaggagtaccaagtctcattcttgagagaagtgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcattt |
2136100 |
T |
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| Q |
330 |
acctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaagtatcctacaaaacatcagttcatttcctacatggaatcctatgct |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136099 |
acctaaacatttttgtgaactacctatgatgagttttcctcaaacttttcctaagtatcctacaaaacatcagttcatttcctacatggaatcctatgct |
2136000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 29857940 - 29857860
Alignment:
| Q |
275 |
attgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
355 |
Q |
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||||||||||||||||||||||||| ||||| |||||| | ||||||||||| | |||||||| || ||| ||||||||| |
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| T |
29857940 |
attgcatagcttcactatggcaaaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactaccta |
29857860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 39839088 - 39839170
Alignment:
| Q |
273 |
tgattgcatagcttcactatggcaaaatagaacctatgaccgtttaaaacttcatttacctaaacatttttgtgaactaccta |
355 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||| | || |||||||| | || ||||| || ||| ||||||||| |
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| T |
39839088 |
tgattgcatagcatcactatggcaaaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactaccta |
39839170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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