View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_6 (Length: 755)
Name: NF0809_low_6
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 9 - 726
Target Start/End: Original strand, 3307212 - 3307929
Alignment:
| Q |
9 |
atcataggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307212 |
atcaaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccg |
3307311 |
T |
|
| Q |
109 |
ttcaagatgagattacctcggaggaggattatgagagtgcgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgc |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307312 |
ttcaagatgagattgcctcggaggaggattatgagagtgtgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgc |
3307411 |
T |
|
| Q |
209 |
tcttatcacatgtgtccaagnnnnnnnnntgagactttggagttgaaagaaggtggactcgttcacttagaaataacacaaagtgcaaggttcaagttat |
308 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3307412 |
tcttatcacatgtgtccaggaaaaaaaatagagactttggagttgaaagaaggtggactcgttcacttagaaataacacagagtgcaaggttcaagttat |
3307511 |
T |
|
| Q |
309 |
gagttcaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgcatgaatggatcattttgaaccatattagatgca |
408 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3307512 |
gagtttaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgaatgaatggatcattttgaaccatattagatgca |
3307611 |
T |
|
| Q |
409 |
aatttttggagttgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagaca |
508 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307612 |
aatttttggagctgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagaca |
3307711 |
T |
|
| Q |
509 |
cctgtggaggtttgaagttagagctctcgattgtgtcttcattggttatcctgaaggcataagggttacaagttattcaattgagtatggaacctggagg |
608 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3307712 |
cctatggaggtttgaagttagagctctcgattgtgtcttcattggttatccagaaggcataagggttacaagttattgaattgagtatggaacctggagg |
3307811 |
T |
|
| Q |
609 |
cttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagt |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307812 |
cttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgtgtttgaggatgagtttcccactagt |
3307911 |
T |
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| Q |
709 |
aagaccaggtatggaaat |
726 |
Q |
| |
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|||||||||||||||||| |
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| T |
3307912 |
aagaccaggtatggaaat |
3307929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
31 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
73 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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