View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_60 (Length: 430)

Name: NF0809_low_60
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_60
NF0809_low_60
[»] chr5 (3 HSPs)
chr5 (120-421)||(15418733-15419034)
chr5 (125-193)||(15450983-15451051)
chr5 (125-181)||(20322001-20322057)
[»] chr1 (2 HSPs)
chr1 (7-110)||(35916472-35916575)
chr1 (337-420)||(52075800-52075883)
[»] chr8 (1 HSPs)
chr8 (348-402)||(7891554-7891608)
[»] chr7 (1 HSPs)
chr7 (352-405)||(7290371-7290424)
[»] chr4 (2 HSPs)
chr4 (353-402)||(33450748-33450797)
chr4 (159-196)||(35268399-35268436)
[»] chr2 (1 HSPs)
chr2 (340-405)||(10127471-10127535)
[»] chr3 (1 HSPs)
chr3 (377-415)||(45298500-45298538)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 120 - 421
Target Start/End: Complemental strand, 15419034 - 15418733
Alignment:
Q  120 tcacgcactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagcagcaatgtgaaggacgcttgcaaacagggccggctaac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  15419034 tcacgcactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgagttagcagcaatgtgaaggacgcttgcaaacagggctggctaac 15418935  T
Q  220 taaagtttgagagaaacacactgttttttattttaaaattacacttttcacttctcaaattctcttcttttcaacttcctttaacccaatggcagttaac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15418934 taaagtttgagagaaacacactgttttttattttaaaattacacttttcacttctcaaattctcttcttttcaacttcctttaacccaatggcagttaac 15418835  T
Q  320 tattgttgcgttctggtttacaccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgcttgacaagtcatattc 419  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  15418834 tattgttgcgttctggtttacaccacaatagcaacaacacctcacacactactccaaaacacaaaccaacctctttccatttgtttgacaagtcattttc 15418735  T
Q  420 tt 421  Q
    ||    
T  15418734 tt 15418733  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 15451051 - 15450983
Alignment:
Q  125 cactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagcagcaatgtgaag 193  Q
    ||||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||| ||||||||    
T  15451051 cactatgtgacaatcaatgtccaagtgcttggttctttcatgaaaaactggattagcagctatgtgaag 15450983  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 20322001 - 20322057
Alignment:
Q  125 cactatgtgacaatctatttccaaatgtttggtactttcgtgaaaaactgggttagc 181  Q
    ||||||||||||||| |||||||| ||||| || | ||| |||||||| ||||||||    
T  20322001 cactatgtgacaatcaatttccaagtgtttagtgcgttcatgaaaaacagggttagc 20322057  T

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Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
Q  7 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916575 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 35916476  T
Q  107 agct 110  Q
    ||||    
T  35916475 agct 35916472  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 52075800 - 52075883
Alignment:
Q  337 ttacaccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgcttgacaagtcatattct 420  Q
    ||||| || ||||||||||||| ||  |||||| |||||||| ||||| |||||||||| ||||||||| ||| ||||| ||||    
T  52075800 ttacatcagaatagcaacaacatctcccacacttctccaaaatacaaatcaacctcttttcatttgcttaacatgtcattttct 52075883  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 7891608 - 7891554
Alignment:
Q  348 tagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttg 402  Q
    ||||||||||||||  |||||| ||||||||||||||| ||||||||||||||||    
T  7891608 tagcaacaacacctcccacacttctccaaaacacaaactaacctctttccatttg 7891554  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 7290371 - 7290424
Alignment:
Q  352 aacaacacctaacacactactccaaaacacaaaccaacctctttccatttgctt 405  Q
    |||| ||||| ||||| | ||| |||||||||||||||||||||||||||||||    
T  7290371 aacatcacctcacacatttctctaaaacacaaaccaacctctttccatttgctt 7290424  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 33450797 - 33450748
Alignment:
Q  353 acaacacctaacacactactccaaaacacaaaccaacctctttccatttg 402  Q
    |||||||||  |||||||||||||||||||||||||| || |||||||||    
T  33450797 acaacacctcccacactactccaaaacacaaaccaacatcattccatttg 33450748  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 35268399 - 35268436
Alignment:
Q  159 ctttcgtgaaaaactgggttagcagcaatgtgaaggac 196  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  35268399 ctttcatgaaaaactgggttagctgcaatgtgaaggac 35268436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 10127535 - 10127471
Alignment:
Q  340 caccacaatagcaacaacacctaacacactactccaaaacacaaaccaacctctttccatttgctt 405  Q
    ||||| ||||||||||||||||  |||| | |||||||||||||| |||||||||| |||||||||    
T  10127535 caccaaaatagcaacaacacctc-cacatttctccaaaacacaaatcaacctcttttcatttgctt 10127471  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 45298538 - 45298500
Alignment:
Q  377 aacacaaaccaacctctttccatttgcttgacaagtcat 415  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  45298538 aacacaaatcaacctctttccatttgcttaacaagtcat 45298500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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