View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_66 (Length: 412)
Name: NF0809_low_66
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 16645490 - 16645781
Alignment:
| Q |
1 |
gtgctcacacacctagggcacagggtcgtgagttctgcgattatttatatgttaggttgtgaaacaacaagatatggctacacatgtcaagtccttgaat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645490 |
gtgcttacacacctagggcacagggtcgtgagttctgcgattatttatatgttgggttgtgaaacaacaagatatggctacacatgtcaagtccttgaat |
16645589 |
T |
|
| Q |
101 |
actataagcactacgtgtctcttcctgtatttcttgtcggaggtgaaaaatcattcatgcaagcaaccaattgatatcaaaaagtggataagagagtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645590 |
actataagcactacgtgtctcttcctgtatttcttgtcggaggtgaaaaatcattcatgcaagcaaccaattgatatcaaaaagtggataagagagtgac |
16645689 |
T |
|
| Q |
201 |
tcatactgattcttgagggtcttaatatgtctatgtgacaatatcttccaaaactagaaaatacttaattgatcataacaagttggacattt |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645690 |
tcatactgattcttgagggtcttaatatgtctatgtgacaatatcttccaaaactagaaaatacttaattgatcataacaagttggacattt |
16645781 |
T |
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