View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_67 (Length: 411)
Name: NF0809_low_67
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_67 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 177 - 383
Target Start/End: Complemental strand, 27253825 - 27253619
Alignment:
| Q |
177 |
aatccttaacgcatttaaaaaagatggttaaaatagcttgcaatagataatttagatctcaaaattctcttaacgactgatattacataactaaataact |
276 |
Q |
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| T |
27253825 |
aatccttaacacatttaaaaaagatggttaaaatagcttgcaatagataatttagatctcaaaattcttttaacgactgatattacataacttcataact |
27253726 |
T |
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| Q |
277 |
aagggtgcatttagtttgcatcaaaactctttaacaatgatgcaaattaaatgcagcataaattttataagtttagttagcatcacataactatcgatgc |
376 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||| |
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| T |
27253725 |
aagggtgcatttagtttgcatcaaaactgtttaacaatgatgcaaactaaatgcagcctaaattttctaaatttagttagcatcgcataactatggatgc |
27253626 |
T |
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| Q |
377 |
atttagt |
383 |
Q |
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||||||| |
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| T |
27253625 |
atttagt |
27253619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27254148 - 27254036
Alignment:
| Q |
1 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaaccatgctacatatatagctttctcttgtttaggat |
100 |
Q |
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| T |
27254148 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaaccatgttacatatatagctttttcttgtttaggat |
27254049 |
T |
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| Q |
101 |
gtactatatggtg |
113 |
Q |
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| T |
27254048 |
gtactatatggtg |
27254036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27426322 - 27426383
Alignment:
| Q |
1 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgtt |
62 |
Q |
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| T |
27426322 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgtt |
27426383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 27294267 - 27294200
Alignment:
| Q |
5 |
agagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgttcaaccatgct |
72 |
Q |
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| T |
27294267 |
agagaggccttaagaaaagtttccaaaattctcaaagatgaatttgacttggtatgttcaactatgct |
27294200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27405405 - 27405466
Alignment:
| Q |
1 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatgtt |
62 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
27405405 |
cccaagagacgccttaagaagagtttccaaaattctgaaagatgaatttaacttggtatgtt |
27405466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12547 - 12488
Alignment:
| Q |
1 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatg |
60 |
Q |
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| T |
12547 |
cccaagagaggccttaagaagagtctccaaaattctcaaagatgaatttgacttggtatg |
12488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13354873 - 13354932
Alignment:
| Q |
1 |
cccaagagaggccttaagaagagtttccaaaattctcaaagatgaatttgacttggtatg |
60 |
Q |
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| T |
13354873 |
cccaagagaagcctttagaagagttaccaaaattctcaaagatgaatttgacttggtatg |
13354932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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