View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_69 (Length: 405)
Name: NF0809_low_69
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_69 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 163 - 342
Target Start/End: Complemental strand, 27681826 - 27681647
Alignment:
| Q |
163 |
gcaactcatggaagaagacactttgatatatatggtgcataccatcttgccattatggaatgcagatgtcatgaaggacattttcttcaagattgatggc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27681826 |
gcaactcatggaagaagacactttgatatatatggtgcataccatcttgccattatggaatgcagatgtcatgaaggacattttcttcaagattgatggc |
27681727 |
T |
|
| Q |
263 |
acacctgatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagttgtggg |
342 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27681726 |
acaccttatactggtgcaacacaacaaatggtgcacaatattatggagtatatggaaaagtagcaactttcagttgtggg |
27681647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 27681975 - 27681881
Alignment:
| Q |
10 |
aagaatattatgtgaagctaagtcactccgtgctttatattaaagatatgtgtcttcttttacaactcatggaatattaatttaggtcaaatacc |
104 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27681975 |
aagaaaattatgtgaagctaagttactccgtgctttatattaaagatatgtgtcttcttttacaactcatgaaatattaatttaggtcaaatacc |
27681881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 36397895 - 36397949
Alignment:
| Q |
347 |
ttatactgatccaaaacttgagattaattgaataaaaaagaagaatagcaatatg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36397895 |
ttatactgatccaaaacttgagattaattgactaaaaaagaagaatagcaatatg |
36397949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5165 times since January 2019
Visitors: 5755