View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_73 (Length: 405)
Name: NF0809_low_73
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 396
Target Start/End: Original strand, 3201337 - 3201705
Alignment:
| Q |
28 |
caataggaatgctaacagaatactttgcagaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3201337 |
caataggaatgctaacagaatactttgcagaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatc |
3201436 |
T |
|
| Q |
128 |
aacccaatatgttaccttttgcttcacctcagtgaatgtaatttgagatggccttacactcatgcctactgccaaaggcacatcaattaccacattgtaa |
227 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
3201437 |
aacccaatatgttaccttttgcttcacctcggtgaatgttatttgagatggccttacactcatacgtactgccacaggcacatcaattaccacattgtaa |
3201536 |
T |
|
| Q |
228 |
gttgtgttgacaggtccaacatttgtcaatgttctactataaaactgcgaagtattccccaaccgaatagaaattgatggataattaagttgtgcttgtg |
327 |
Q |
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| T |
3201537 |
gttgtgttaaccggtccaacatttgtcaacgttctactataaaactgtgaagtattccccaaccgaatagaaattgatgggtaattaagttgtgcttgtg |
3201636 |
T |
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| Q |
328 |
gtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagaataat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3201637 |
gtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtataat |
3201705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 28 - 396
Target Start/End: Original strand, 3207311 - 3207679
Alignment:
| Q |
28 |
caataggaatgctaacagaatactttgcagaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatc |
127 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3207311 |
caataggaatgctaacagaatactttgcagaaacccatttgatagagccttgagcaataaagttatcacctctattctctttatcttcaggtataaaatc |
3207410 |
T |
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| Q |
128 |
aacccaatatgttaccttttgcttcacctcagtgaatgtaatttgagatggccttacactcatgcctactgccaaaggcacatcaattaccacattgtaa |
227 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
3207411 |
aacccaatatgttaccttttgcttcatctcagtgaatgttatttgtgatggccttacactcatacctactgccaaaggaacatcaattaccacattgtaa |
3207510 |
T |
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| Q |
228 |
gttgtgttgacaggtccaacatttgtcaatgttctactataaaactgcgaagtattccccaaccgaatagaaattgatggataattaagttgtgcttgtg |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
3207511 |
gttgtgttgacaggtccaacatttgtcaatgttctactataaaactgtgaagtattccccaaccgaatcgaaatcgatggataattaagctgtgcttgtg |
3207610 |
T |
|
| Q |
328 |
gtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagaataat |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||| |
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| T |
3207611 |
gtatgctctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataat |
3207679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 3215249 - 3215609
Alignment:
| Q |
30 |
ataggaatgctaacagaatactttgcagaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatcaa |
129 |
Q |
| |
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||||| || ||||| | ||||||| |||||| ||||||||||||||| |||| ||| ||||||||||||||| || ||| ||| ||| ||||| ||| |
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| T |
3215249 |
atagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttatcacctctattcactatgttttcgggtgtaaaagcaa |
3215348 |
T |
|
| Q |
130 |
cccaatatgttaccttttgcttcacctcagtgaatgtaatttgagatggccttacactcatgcctactgccaaaggcacatcaattaccacattgtaagt |
229 |
Q |
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|| | ||||| || ||||||||| |||||||||||| ||||||| ||| ||| ||| || | || |||||||| ||||||||| ||||||||||||| |
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| T |
3215349 |
ccgagtatgtaactttttgcttcttctcagtgaatgttatttgagcaggctttatactgatatccacagccaaaggaacatcaatttccacattgtaagt |
3215448 |
T |
|
| Q |
230 |
tgtgttgacaggtccaacatttgtcaatgttctactataaaactgcgaagtattccccaaccgaatagaaattgatggataattaagttgtgcttgtggt |
329 |
Q |
| |
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|||||| |||||||||||| |||| |||||| |||||||||| |||||| ||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
3215449 |
catgttgataggtccaacattcgtcaccgttctagtataaaactgagaagtagaccccaacaatatagaaaatgatggataattaagctgtgcttgtggt |
3215548 |
T |
|
| Q |
330 |
atgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcag |
390 |
Q |
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|||||||||| |||||||||||||||||| |||||||| ||||||||||| ||| |||||| |
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| T |
3215549 |
atgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcag |
3215609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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