View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_75 (Length: 402)
Name: NF0809_low_75
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_75 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 402
Target Start/End: Complemental strand, 39584297 - 39583923
Alignment:
| Q |
28 |
caaaaaacactattttattggttaatgcttgggcaattcacagagattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaaga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584297 |
caaaaaacactattttattggttaatgcttgggcaattcacagagattctcaactatggagtgacccaacacaattcaagccagagagatttgacaaaga |
39584198 |
T |
|
| Q |
128 |
aggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattactt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39584197 |
aggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattactt |
39584098 |
T |
|
| Q |
228 |
atacaatgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgt |
327 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39584097 |
atccaatgttttgattggaaaagaataagtgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagctaattcccttggaggccatgt |
39583998 |
T |
|
| Q |
328 |
gtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaagaaattctgt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39583997 |
gtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaggaaattctgt |
39583923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 383
Target Start/End: Complemental strand, 39572713 - 39572566
Alignment:
| Q |
234 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaag |
333 |
Q |
| |
|
||||| |||||||||| ||||| |||| ||||||||||| || | |||||||||||| ||||||||| ||| ||||||||| ||||||||||||| || |
|
|
| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattgat--gagttaaggaaaaggagtcactactccaaagccaattcccttagaggccatgtgtatag |
39572616 |
T |
|
| Q |
334 |
ctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatg |
383 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
39572615 |
ctcgctcaaatgtcatcaacaaggtttttctaaaagccggtgaaaacatg |
39572566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
108 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
182 |
Q |
| |
|
|||||||||||||| |||||||| || | ||||||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
102 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
183 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| || ||||||||| ||||||| || ||||||||||||||||| |||| |
|
|
| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
105 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
182 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| | ||||| ||| ||||||| || ||||| |||| ||| |||||| |
|
|
| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6358 times since January 2019
Visitors: 5767