View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_76 (Length: 402)
Name: NF0809_low_76
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_76 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 104 - 396
Target Start/End: Complemental strand, 43883114 - 43882822
Alignment:
| Q |
104 |
agttgatatttgaatctatttataatttgttatgtatgtgaattaaatactaaccgatgattcattaactacagataaattttcctttagaggagttaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43883114 |
agttgatatttgaatctatttataatttgttatgtatgcgaattaaatactaaccgatgattcattaactacagatatattttcctttagaggagttaaa |
43883015 |
T |
|
| Q |
204 |
ttcattgttagtataatatctgttcctttagaggagttaaattcatggttagtataatattcatatgctctactaaaagcaaagtgaagaatagcatgac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43883014 |
ttcattgttagtataatatctgttcctttagaggagttaaattcatggttagtataatattcatatgctctactaaaagcaaagtgaagaatagcatgac |
43882915 |
T |
|
| Q |
304 |
ctctgagcaaggatgacagatacagcataaatcgagagaatttcattttaacatgcatatacctgatgatttctttgaggggtcctatgctac |
396 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43882914 |
ctctgagcaaggataacagatacagcataaatcgagagaatttcattttaacttgcatatacctgatgatttctttgaggggtcctttgctac |
43882822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 25002885 - 25002803
Alignment:
| Q |
28 |
ggaacaacgttatccaaattctgttgtggtggagaagagggagaagaagttggtgagagttgagagagatctaataagttgat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25002885 |
ggaacaacgttatccaaattctgttgtggtggagaagagggagaagaagttggtgagagttgagagagatctaataagttgat |
25002803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4645 times since January 2019
Visitors: 5751