View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809_low_77 (Length: 402)

Name: NF0809_low_77
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809_low_77
NF0809_low_77
[»] chr5 (2 HSPs)
chr5 (113-397)||(7895346-7895643)
chr5 (123-347)||(7976298-7976531)
[»] chr1 (1 HSPs)
chr1 (7-108)||(35916474-35916575)
[»] chr3 (4 HSPs)
chr3 (133-222)||(2996110-2996195)
chr3 (224-275)||(2996044-2996095)
chr3 (124-173)||(45870213-45870262)
chr3 (229-313)||(45856400-45856484)
[»] chr7 (1 HSPs)
chr7 (224-284)||(44500999-44501059)
[»] chr4 (2 HSPs)
chr4 (138-174)||(3978480-3978516)
chr4 (224-264)||(3978575-3978615)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 113 - 397
Target Start/End: Original strand, 7895346 - 7895643
Alignment:
Q  113 gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7895346 gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggat 7895445  T
Q  213 tttgcgttggt-------------ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaaccct 299  Q
    |||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  7895446 tttgcgttggtgataattatcgtgccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgtaggaactct 7895545  T
Q  300 tcgcatatcaagtgtgacgcttgttaattttactatgtataatcgttttcatagattttacaagtaattccacatcaaaaggagcctcctttgtttct 397  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7895546 ttgcatatcaagtgtgacccttgttaattttactatgtataatcgttttcatagattttacaagtaattccacatcaaaaggagcctcctttgtttct 7895643  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 347
Target Start/End: Complemental strand, 7976531 - 7976298
Alignment:
Q  123 ttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttgg 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||     ||||||| ||||||||| | | ||||||||||||| ||||    
T  7976531 ttaccctaatggaggtcatgaaacattgtttccaaaatctttcaatttgccggcac----taactagcttgcaactagagagttttggattttgccttgg 7976436  T
Q  223 t-------------ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatca 309  Q
    |             | ||||| ||||| || ||||||||||||||||||||| || ||||||||| |||||||| | |||||||||||||| ||||||||    
T  7976435 tgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcattaccaattctaccttgagtggtgcaggaaccctttgcatatca 7976336  T
Q  310 agtgtgacgcttgttaattttactatgtataatcgttt 347  Q
    ||||  |||||| | || || |||||||||| ||||||    
T  7976335 agtgctacgcttatgaacttaactatgtatactcgttt 7976298  T

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Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 35916575 - 35916474
Alignment:
Q  7 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916575 cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac 35916476  T
Q  107 ag 108  Q
    ||    
T  35916475 ag 35916474  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 2996195 - 2996110
Alignment:
Q  133 ggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttgg 222  Q
    ||||||||||||||| ||||||||||||||||||||||  || |    ||| ||||| ||| ||||||||||||||| |||||| |||||    
T  2996195 ggaggtcatgaaacaatgtttccaaaatctttcaatttatcggc----attgactagcttgtaactacaaaattttgaattttgtgttgg 2996110  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 2996095 - 2996044
Alignment:
Q  224 ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattg 275  Q
    ||||||||||||| |||||||||| |||||||| ||||||| || |||||||    
T  2996095 ccgagccattttcgacttttaacaggttgaataatttgctcatttccaattg 2996044  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 45870262 - 45870213
Alignment:
Q  124 taccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgcc 173  Q
    ||||||||||   |||||||||||||||||||||||||| || |||||||    
T  45870262 taccctaatgatcgtcatgaaacactgtttccaaaatctatcgatttgcc 45870213  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 45856484 - 45856400
Alignment:
Q  229 ccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtg 313  Q
    ||||||||||| |||||   ||||||||||||| |||||  ||||||| | |||||   ||||| ||||||| ||||||||||||    
T  45856484 ccattttcaacctttaaacggttgaatagtttggtcctttacaattgtgctttgaaggatgcagtaaccctttgcatatcaagtg 45856400  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 44501059 - 44500999
Alignment:
Q  224 ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaa 284  Q
    |||||||||||||||| |||||||  |||||||||||| |||||  | |||||||| ||||    
T  44501059 ccgagccattttcaacctttaacagattgaatagtttggtccttcacgattgtaccgtgaa 44500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 3978480 - 3978516
Alignment:
Q  138 tcatgaaacactgtttccaaaatctttcaatttgccg 174  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  3978480 tcatgaaacaccgtttccaaaatctctcaatttgccg 3978516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 3978575 - 3978615
Alignment:
Q  224 ccgagccattttcaacttttaacaagttgaatagtttgctc 264  Q
    ||||||||||||| | |||||||| ||||||||||||||||    
T  3978575 ccgagccattttcgatttttaacaggttgaatagtttgctc 3978615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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