View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_79 (Length: 398)
Name: NF0809_low_79
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_79 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 37235 - 36869
Alignment:
| Q |
30 |
tatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtgatcatctctaatttttggttataatacttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37235 |
tatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtgatcatctctaatttgtggttataatacttt |
37136 |
T |
|
| Q |
130 |
gttacttttgatcctgccgtgcatgcatgccttggaaagcatattggttcttgaaattttgttcaacaacagtcgagtcaaatatgatgaatagtaagag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
37135 |
gttacttttgatcctgccgtgcatgcatgccttggaaagcatattggctcttgaagttttgttcaacaacagtcgaatcaaatatgatgaatagtgagag |
37036 |
T |
|
| Q |
230 |
ttctgccagagatcgaagacttgaaaagttacaagaaattaaatccttaaggaatgagtcaatcaaagattggtttggg------ttttggttttacatt |
323 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37035 |
tcctgccagagatcgaagacttgaaaagttacaagaaattaaatccttaaggaatgagtcaatcaaagattggtttgggttctgattttggttttacatt |
36936 |
T |
|
| Q |
324 |
gcctttccatttatttttgcaaactgttattcctaggataaagaccatttttatgctatcctatgct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36935 |
gcctttccatttatttttgcaaactgttattcctaggataaagaccatttttatgctatcctatgct |
36869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4953 times since January 2019
Visitors: 5753