View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_8 (Length: 732)
Name: NF0809_low_8
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 53 - 720
Target Start/End: Complemental strand, 11544873 - 11544206
Alignment:
| Q |
53 |
acatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttt |
152 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544873 |
acatattcaaggaccaaagctacagtttactctcaattataaagcaaaagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttc |
11544774 |
T |
|
| Q |
153 |
tgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcgaaaagagactctaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11544773 |
agagcaggcagagggagccaaagggtggtagccgcagtaacaatagtgccatttggctggcttgtatcatcgtccgtggtgctgcgaaaagagactctaa |
11544674 |
T |
|
| Q |
253 |
caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544673 |
taccaccaatgctagcaagagttaaatggttcaattccaattgaccaggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttat |
11544574 |
T |
|
| Q |
353 |
cacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagctaaatataaaatttacaaggaaaatagat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11544573 |
cacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagataaatataaaatttacaaggaaaatagat |
11544474 |
T |
|
| Q |
453 |
gaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaacaggtattgcttcaacataagagcctaaagatc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544473 |
gaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaacaggtattgcttcaacataagagcctaaagatc |
11544374 |
T |
|
| Q |
553 |
tctcacacgttctttgaagctccttaatccagctttcagctccatataaattatagtcgccaacaagatctctatacacataatgtgtatggatcttatc |
652 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11544373 |
tctcacacattctttgaagctccttaatccagctttcagctccatataaattatagttcccaacaagatctctatacacgtaatgtgtatggatcttatc |
11544274 |
T |
|
| Q |
653 |
ttccatttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgagtat |
720 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544273 |
ttccacttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgagtat |
11544206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 53 - 720
Target Start/End: Complemental strand, 11558289 - 11557627
Alignment:
| Q |
53 |
acatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttt |
152 |
Q |
| |
|
|||||| ||||||||||| | ||| | |||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11558289 |
acatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgttttgtaggatctttgaggaattcaaaaactttc |
11558190 |
T |
|
| Q |
153 |
tgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtccatggtgctgcgaaaagagactctaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
11558189 |
tgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctggcttgcatcatcgtcggtggttgcgcgaatagagactctaa |
11558090 |
T |
|
| Q |
253 |
caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccattctctgagcaagctttat |
352 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||| | |||||||||||| || |||||||| | |||||||||||| |
|
|
| T |
11558089 |
ccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacatcttcaccattctatcagcaagctttat |
11557990 |
T |
|
| Q |
353 |
cacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagctaaatataaaatttacaaggaaaatagat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
11557989 |
cacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattaattaaattcgctaaatataaaatttacaaggaaaatagat |
11557890 |
T |
|
| Q |
453 |
gaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaacaggtattgcttcaacataagagcctaaagatc |
552 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11557889 |
gaatagagatatttggaagggtaaatttagaagacaa-----gattaacctcctatagtttcttcaacaggtattgcttcaacattagagcctaaagatc |
11557795 |
T |
|
| Q |
553 |
tctcacacgttctttgaagctccttaatccagctttcagctccatataaattatagtcgccaacaagatctctatacacataatgtgtatggatcttatc |
652 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11557794 |
tctcgcacattctttgaagctccttaatccagctttcagctccatataaattatattcaccaacaagatctctatacacgtaatgtgtatggatcttatc |
11557695 |
T |
|
| Q |
653 |
ttccatttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgagtat |
720 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11557694 |
ttccacttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttttgttgagtat |
11557627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 636 - 720
Target Start/End: Original strand, 22823070 - 22823154
Alignment:
| Q |
636 |
tgtgtatggatcttatcttccatttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgagtat |
720 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
22823070 |
tgtgtatggatcttatcttccacttccacatgttcaacccaagtgacctaccataaaacatgtaataatatcttttgttgagtat |
22823154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 636 - 720
Target Start/End: Original strand, 22831876 - 22831960
Alignment:
| Q |
636 |
tgtgtatggatcttatcttccatttccacatgttcaacccaagtgacctaacataaaacatgtaataatatcttgtgttgagtat |
720 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
22831876 |
tgtgtatggatcttatcttccacttccacatgttcaacccgagtgacctaacataaaacatgtattaatatcttttgttgagtat |
22831960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 110 - 384
Target Start/End: Original strand, 12064193 - 12064468
Alignment:
| Q |
110 |
ctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggc |
209 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
|
| Q |
210 |
tggcttgtatcatcgtccatggtgctgcgaaaagagactctaa-caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgtt |
308 |
Q |
| |
|
||||||||||||| ||| |||| ||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
12064293 |
tggcttgtatcattgtcggtggtatcgcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgtt |
12064392 |
T |
|
| Q |
309 |
aaactttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatca |
384 |
Q |
| |
|
|| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12064393 |
aagcattcacaaaacattttgaccattctatcagcaagctttatcacactattcctcccttcaagtgtttggatca |
12064468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4607 times since January 2019
Visitors: 5751