View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_81 (Length: 394)
Name: NF0809_low_81
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_81 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 5040726 - 5041119
Alignment:
| Q |
1 |
tgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnn |
100 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
5040726 |
tgcaaaaccctaattctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgatatctttacattcttcctcttcggctttt |
5040825 |
T |
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| Q |
101 |
nnncaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagc |
200 |
Q |
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| T |
5040826 |
tttcaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagc |
5040925 |
T |
|
| Q |
201 |
ttcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040926 |
ttcttcaattgaagaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcat |
5041025 |
T |
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| Q |
301 |
tttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgt |
394 |
Q |
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| T |
5041026 |
tttggtggtttatcagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgt |
5041119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43187049 - 43187247
Alignment:
| Q |
1 |
tgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnn |
100 |
Q |
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||||| || ||||| ||||||| ||||||||||||||| || || || || |||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
43187049 |
tgcaagactctaatcctttcacttattctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt-- |
43187146 |
T |
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| Q |
101 |
nnncaattacatcaatatcatccattccaaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatc |
197 |
Q |
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|| ||||| | |||| || |||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
43187147 |
------ttccatca----cttccaaacccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatc |
43187236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 6259632 - 6259553
Alignment:
| Q |
13 |
attctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctctt |
92 |
Q |
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|||||||||| |||||||| |||||||||||||| || ||| |||||||||| ||||| ||||| |||||||| ||||| |
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| T |
6259632 |
attctttcactaattctttctcttctatgtcttgctgctacactttgtggatcctttgaaatcttcacattctttctctt |
6259553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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