View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_82 (Length: 385)
Name: NF0809_low_82
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 37453889 - 37453523
Alignment:
| Q |
7 |
tctacaatgtgaacagtcctagatttgatattgcctttgtagtttggtattaggnnnnnnnnnnnnnnnnntaattgtgctttcttatcgttggtagatg |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||| |
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| T |
37453889 |
tctacaaggtgaacagtcctagatttgatattgcctttgtagtttgatattaggtctctctctctttctcttaattgggctttcttagtgttggtagatg |
37453790 |
T |
|
| Q |
107 |
cttcactgtggttagacactgttacaccgtatacctagtatgtttgaataatgttgatatcttgaagtataatttaaacctcattcctaaaatatgattt |
206 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37453789 |
ctgcactgtggttagacactgttataccgtatacctagtatgtttgaataatgttgatatcttgaagtataatttaaacatcattcctaaaatatgattt |
37453690 |
T |
|
| Q |
207 |
cctcagcaactttgaagccaattacctctgatgctctcgttattctattacagtgtttccttattaattagttatatctgatcagttctatcacatttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37453689 |
cctcagcaactttgaagccaattacctctgatgctctcgttattctattacagtgtttccttattaattagttatatctgatcagttctatcacatttat |
37453590 |
T |
|
| Q |
307 |
tatattcaggctatcatggagtacggatatggattagatgcagtcagattttcatacagtcagttca |
373 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37453589 |
tatattcaggctatcatagagtacggatatggattagatgcagtcagattttcatacagtcagttca |
37453523 |
T |
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