View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_83 (Length: 383)
Name: NF0809_low_83
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 83 - 369
Target Start/End: Complemental strand, 33117715 - 33117429
Alignment:
| Q |
83 |
ctattagaattttgttatcggactaccaactatttatatctacacgctaaactcaataatgatggacgtgaaagagtgttaaaaagtctcgcattgaatt |
182 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | || |||| |||| |
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| T |
33117715 |
ctattaggatttcgttatcggactaccaactatttatatctacacactaaactcaataatgatggacgtgaaagagtattaaaaaatttcacattaaatt |
33117616 |
T |
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| Q |
183 |
agatataacttaaatatgtgtttataaaaaggtgcaatctcactttacaagttggttttatagatttgtattaaactaaaccacgtattctaatagttgt |
282 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| || ||||||||||| ||||||| ||||||||||||| | |
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| T |
33117615 |
agatataacttaaatatgtgtttataaataggtgcaatctcactttacaaattagttttatggagttgtattaaaccaaaccacttattctaatagttct |
33117516 |
T |
|
| Q |
283 |
atttcaatcttgattgattccttttcctcacgaagtctctgtatttaatttgtataattttggagggtaattgcacgggtatcaagt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117515 |
atttcaatcttgattgattccttttcctcacgaagtctctgtatttaatttgtataattttggagggtaattgcacgggtatcaagt |
33117429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 25002763 - 25002835
Alignment:
| Q |
6 |
ctccaagaatatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcacca |
78 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25002763 |
ctccaagaaaatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcacca |
25002835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 24998795 - 24998736
Alignment:
| Q |
6 |
ctccaagaatatcaaagccagcaggaaactgcaaaatcaaatcaacttattagatctctc |
65 |
Q |
| |
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||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
24998795 |
ctccaagaaaatcaaagccaacaggaagctgcaaaatcaaatcaacttattagaactctc |
24998736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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