View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_84 (Length: 379)
Name: NF0809_low_84
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 31 - 332
Target Start/End: Original strand, 43933208 - 43933509
Alignment:
| Q |
31 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43933208 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
43933307 |
T |
|
| Q |
131 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43933308 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
43933407 |
T |
|
| Q |
231 |
tgttcttatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattccaatcatcttgttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43933408 |
tgttcttatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattccaatcatcttgttc |
43933507 |
T |
|
| Q |
331 |
at |
332 |
Q |
| |
|
|| |
|
|
| T |
43933508 |
at |
43933509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 9546305 - 9546338
Alignment:
| Q |
337 |
ctcgacatcttcgtcttcttcttggtcttcatct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9546305 |
ctcgacatcttcgtcttcttcttggtcttcatct |
9546338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 318
Target Start/End: Original strand, 35132893 - 35133074
Alignment:
| Q |
137 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttct |
236 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| | | || |
|
|
| T |
35132893 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgct |
35132992 |
T |
|
| Q |
237 |
tatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattcca |
318 |
Q |
| |
|
| || | |||||| ||||| || || ||||| |||||| ||||||| | ||||||| |||||||||||||| ||| |||| |
|
|
| T |
35132993 |
tgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactcca |
35133074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5257 times since January 2019
Visitors: 5755