View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_88 (Length: 375)
Name: NF0809_low_88
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 50649230 - 50649582
Alignment:
| Q |
1 |
tcaacataagtaggtaaacatcagaacaatggaaatttaaaagaccaaaaagtagtgtctgattctaatttgggtgtttatgttgtgaacaagatgattg |
100 |
Q |
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| T |
50649230 |
tcaacataagtaggtaaacatcagaacaatggaaatttaaaagaccaaaaagtagtgtctgattctaatttggctgtttatgttgtaaacaaaatgattg |
50649329 |
T |
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| Q |
101 |
acaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaacaaaactaccataa |
200 |
Q |
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| T |
50649330 |
acaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaacaaaactaccataa |
50649429 |
T |
|
| Q |
201 |
cgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaatagagttgttac |
300 |
Q |
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| T |
50649430 |
cgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaatagagttgttac |
50649529 |
T |
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| Q |
301 |
tttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
353 |
Q |
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| T |
50649530 |
tttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
50649582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 77 - 353
Target Start/End: Original strand, 50659718 - 50659994
Alignment:
| Q |
77 |
tttatgttgtgaacaagatgattgacaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaa |
176 |
Q |
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| T |
50659718 |
tttaagttgtgaacaaaatgattgacaaacgccatttaatatgcgacagttttcttctttttcaaaatttagaagttccctaattaattgataacaaaaa |
50659817 |
T |
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| Q |
177 |
cacaaatcaacaaaactaccataacgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaata |
276 |
Q |
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| T |
50659818 |
cagaattcaacaagactaccataacaaaaacaagtaagaaaactatatagataaaaacaatagtgcttcttaccaaatgtggcaccaaagtcagtcaata |
50659917 |
T |
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| Q |
277 |
tttcagcacgaatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
353 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50659918 |
tttcagcatggatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
50659994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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