View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_9 (Length: 729)
Name: NF0809_low_9
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 292 - 559
Target Start/End: Complemental strand, 30901253 - 30900986
Alignment:
| Q |
292 |
ttgaacaacaccaccacaacccacatttgtcttggagaatctcacagaagaagaaccgttcacatggttgaaaatgggtggagaggaagataagaatgga |
391 |
Q |
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| T |
30901253 |
ttgaacaacaccaccacaacccacatttgtcttggagaatctcacagaagaagaaccgttcacatggttgaaaatgggtggagaggaagataagaatgga |
30901154 |
T |
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| Q |
392 |
ggaagctttggtttatcaaagaatgagaaggaaacggatgaagaactttgtaggggcattttgtgtgaagactatgaagtgagaagatgatagtgggaaa |
491 |
Q |
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| T |
30901153 |
ggaagctttggtttatcaaagaatgagaaggaaacggatgaagaactttgtaggggcattttgtgtgaagactatgaagtgagaagatgatagtgggaaa |
30901054 |
T |
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| Q |
492 |
tacaagagtgaagagtgagatgtgggagcaaaatttgcaactgaactcaagtatttgtaaaagtattt |
559 |
Q |
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| T |
30901053 |
tacaagagtgaagagtgagatgtgggagcaaaatttgcaactgaactcaagtatttgtaaaaggattt |
30900986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 559 - 700
Target Start/End: Complemental strand, 30900275 - 30900129
Alignment:
| Q |
559 |
tgtacgaacatgaaaatgtggcacgattcctcgcgatctaggctctatataaagcttcatcttcac-nnnnnnnagagagttttaagagagagaaacttg |
657 |
Q |
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| T |
30900275 |
tgtacgaacataaaaatgtggcacgattcctcaggatcttggctctatataaagcttcatcttcacttttttttagagagtttca--agagagaaacttg |
30900178 |
T |
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| Q |
658 |
gtaaataaaatgagg------tagggttgagtgtattttgtgagaggtt |
700 |
Q |
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| T |
30900177 |
gtaaataaaatgaggtaactttagggttgagtgtattttgtgaggggtt |
30900129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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