View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_93 (Length: 371)
Name: NF0809_low_93
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 6993593 - 6993320
Alignment:
| Q |
1 |
ttgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttcgttcatcgatggggataagggggaaggagt |
100 |
Q |
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| T |
6993593 |
ttgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttcgttcatcgatggggataagggggaaggagt |
6993494 |
T |
|
| Q |
101 |
ggcctnnnnnnnctgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtatcaaagtggctgggttgaatagaacccacaa |
200 |
Q |
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| T |
6993493 |
ggcctaaaaaaactgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtatcaaagtggctgggttgaatagaacccacaa |
6993394 |
T |
|
| Q |
201 |
aggtcgtcttaacccaagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgcttctg |
274 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993393 |
aggtcgtcttaacccgagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgcttctg |
6993320 |
T |
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